Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00445 ATGCCCTCTAAAGATGTTGTTTCATGGAACGTATTGATTTGTGGGTATTCACAAAATGGGCATCCTCATGATGCTCTTCAACTCTTTGTGCACATGCTGAGACAGAGTTTCAGACCTAACCAAACAACAATTGCTAGTTTGCTACCTTCTTGTAGTTGCCGTGAACTTTTTCTTCAGGGTAGATCCCTTCATGGGTTTGGAATCAAAGCTGGCCTTGGTTTGGATCCTCAATTGAGTAATGCCCTTACCTCAATGTATGCCAAGTGTGATGACTTGGAAGCATCCCATCTCTTATTTGAAGAAATGGCTGAGAAGAATGTTGTTTCTTGGAATACCATGATTGGTGCCTATGGCCAAAACGGTTTTTTGGACAAGGCAGTATTGTGCTTTAAAGAGATGCTGAAGGAAGGTTTGCAACCCAGTCCAGTGACAATGATAAACCTTATGTCAGCTAATGCTGTTCCACAAACTATCCATTGCTATATTATCAAATGTGGCTTCACCAGTGATGCTTCTGTTGTAACCTCACTAGTTTGTCTTTATGCAAAGCAACGGTTCACTGATATGGCGAAATTGATTTATGAAAGTTATCCCACGAAAGACCTGATTTCGTTAACTGCAATAATCTCTAGCTATTGTGAAAAAGGTGATGTAGAGTCTGCGGTTGAGTGTTTTATCCAAACTATGCAGTTAGACATAAAACCAGATGCAGTTGCCTTGATTAGTGTCCTTCATGGAATTACTAATCCTTCTCATTTTCCCATTGGGTGTGCTTTTCATGGTTATGGATTGAAAAATGGGCTGAGTAATGATTGCTTAGTTGTAAATGGGCTAATAAGCATGTATTCAAGATTTGATGAGATAGAAGCTGCTTTGTCTTTGTTTTTTGATAGGAGTGAAAAACCATTGGCCACTTGGAATTCTGTTATATCCGGCTGTGTTCAGGCTGGAAAATCAAGTGATGCCATGGAGTTGTTCTGCCAAATGAACATGTATGGACAAAAGCCAGATGCTATTACTGTCACTAGTCTATTATCGGGGTGTTGCCAGCTGGGGTACCTGCGGATAGGAGAGACTCTACATGGATATATCCTTAGAAACAATGTAAAAGTGGAAGATTTTACAGGAACTGCTCTAATAGATATGTATACCAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTATAGCATCAATGATCCATGTTTGGCAACATGGAACTCCATCATATCTGGTTATAGTTTATATGGACTTGAACACAAAGCTTTCAGTTGTTTTTCTAAACTGCAAGAACATGGGCTAGAACCGGATAAAATCACCTTCTTGGGAGTTTTAGCAGCATGCACACATGGGGGACTTTTTTACACAGGAATGGAATACTTTTGTAGCATGACAAAAGAATATGGTTTGATGCCAAATTTGCAGCATTATGCTTGCATAGTTGGTCTCTTGGGTCGGACAGGGTTGTTCAAGGAAGCAATTGAAATCATTAACAACATGGAAATTCGGCCTGATTCTGCTGTTTGGGGAGCACTTTTAAGTGCTTGTTGCATTCAAGAGGATGTAAAGCTTGGGGAATGCTTGGCGAAAAAATTGTTTTTATTAAATTACAAAAACGGTGGGTTTTATGTATTAATGTCAAATCTTTATGCGATTGTTGGGAGGTGGGATGATGTAGCAAGGGTGAGGGATATGATGAGAGACATCGGAGGAGATGGATGTTCAGGTGCTAGTGTTATTGAAGTGACACCCCTTAGAGACTCGAATAACTTGTGCCCAAatcagctggataagatcgtcataggcaataataaaatgcatgtcaatatacccaaataCCGGCGGTGGGAATGGAGAAGAACAGAGCATAAGGCAAAGACTGAAAGAAATGGAGGTAAGCAAAGGCACTACAAACCAAACTTCGTGAGCAACGGGAAGACATATGCACAAGTGTTAAAACAAAATGGTGGGAGGAACCAAGTATGGAAGGAAGTCAGAGATGGAGGCGTGGAAAAGGACGACGAACAGTGGAAGGGGTACGATGTCAAAGTAGAAGAGAAAAATAACGTGTGGCTAGAAAGTAGTTGGGTGGGGAGGATGCTCGAGCTGTCCCTATTTGACAAGATACAAGAGACGGTTGTTCCATATGAGTCGCGAGATATAAAGTTAAGGTATTTAGGGGATGACTTGGTACTTATAACAGGCTTAGATGAAGAAACGATTAAGGAGAGGTTACATGAAGAAGATGGTTGCCTATCTATGTTGCACTCTATTCAAAAGTGGAGCCCGGATGTAGCTGTAGGAAATAGAATGGTCTGGGTTCGTTGCTATGGAGTTCCACTCCAAACATGGGGAGTGGAGGTTTTTTCAAAGATTGTGAGTATACATGGGTCCTTCATTAAATTGGATGATGACACAAGCAACTTCCATAGGCTGGACTATGCTCGGATCCTTATTCAATCATCAGACTCAAAGCCAATCCATTTTAGCGACACTATGCGTGTAAATGGGCATATACGTCATGTCTCCATCATTGAAGAATTTGGTGCGCAGGCAGCTACGTGTCATTGTTGGAAATGGGATTCAAGTGAGTTCAGCATGTCTCAAGGAAGTGACTCAGGGGGTGATAGATGGTCCTTTGAATCGGGATGGTCTAGAAATATGAACGAGATGGGCGACGAAGCATCTCAGGAGGTTACTCAGTTCAAGGCAGAGATGGTAGGGGAACCGGTGGAGAATTTTTCAAACTTTGACACGTCGTGTAAAGACCGTCAGTCCAACAGCAAAGCTGACCTATTAGATGGGACAAAAGATAGCCAAAAGTTGACAAGCACGAAACTGAAAAGTATAAGGGACGAAAAGGATGGAGCAGTGGCTGCGGAGTTGGTAAATGCAGAATGCAATAATGGCTCTGACATAAGGATTAGCATACAAAATACTGGGGAAAGTGATGGGCAACTAGATGCTGATGGGCTAGCTACTAAAACGACTGAGTGTGGGCCTATAGTTTGCAGGCCTTCTATGGACCAAGCGGTGGGAATGAGCCTCCAACAAATAGTGGCCATGGAGACGAGTCCAAAATATATTGATCCACATCAGGAACACCTCTCGCAGCCAGGCAATGAAGAATGCTGCATTAATTCATCCCCAACGAAGATGGGCCTCACACCTCTTGAACTTGACCATCGGCCACTAAATGGCCACGTTTCTCCACTCGACGTGGTTAGCTAA 3234 0.4153 MPSKDVVSWNVLICGYSQNGHPHDALQLFVHMLRQSFRPNQTTIASLLPSCSCRELFLQGRSLHGFGIKAGLGLDPQLSNALTSMYAKCDDLEASHLLFEEMAEKNVVSWNTMIGAYGQNGFLDKAVLCFKEMLKEGLQPSPVTMINLMSANAVPQTIHCYIIKCGFTSDASVVTSLVCLYAKQRFTDMAKLIYESYPTKDLISLTAIISSYCEKGDVESAVECFIQTMQLDIKPDAVALISVLHGITNPSHFPIGCAFHGYGLKNGLSNDCLVVNGLISMYSRFDEIEAALSLFFDRSEKPLATWNSVISGCVQAGKSSDAMELFCQMNMYGQKPDAITVTSLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKVFYSINDPCLATWNSIISGYSLYGLEHKAFSCFSKLQEHGLEPDKITFLGVLAACTHGGLFYTGMEYFCSMTKEYGLMPNLQHYACIVGLLGRTGLFKEAIEIINNMEIRPDSAVWGALLSACCIQEDVKLGECLAKKLFLLNYKNGGFYVLMSNLYAIVGRWDDVARVRDMMRDIGGDGCSGASVIEVTPLRDSNNLCPNQLDKIVIGNNKMHVNIPKYRRWEWRRTEHKAKTERNGGKQRHYKPNFVSNGKTYAQVLKQNGGRNQVWKEVRDGGVEKDDEQWKGYDVKVEEKNNVWLESSWVGRMLELSLFDKIQETVVPYESRDIKLRYLGDDLVLITGLDEETIKERLHEEDGCLSMLHSIQKWSPDVAVGNRMVWVRCYGVPLQTWGVEVFSKIVSIHGSFIKLDDDTSNFHRLDYARILIQSSDSKPIHFSDTMRVNGHIRHVSIIEEFGAQAATCHCWKWDSSEFSMSQGSDSGGDRWSFESGWSRNMNEMGDEASQEVTQFKAEMVGEPVENFSNFDTSCKDRQSNSKADLLDGTKDSQKLTSTKLKSIRDEKDGAVAAELVNAECNNGSDIRISIQNTGESDGQLDADGLATKTTECGPIVCRPSMDQAVGMSLQQIVAMETSPKYIDPHQEHLSQPGNEECCINSSPTKMGLTPLELDHRPLNGHVSPLDVVS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00445 1077 Pfam PPR repeat family 304 350 IPR002885 -
Cca07g00445 1077 Pfam PPR repeat family 4 51 IPR002885 -
Cca07g00445 1077 Pfam PPR repeat family 105 150 IPR002885 -
Cca07g00445 1077 Gene3D Tetratricopeptide repeat domain 160 252 IPR011990 GO:0005515
Cca07g00445 1077 Gene3D Tetratricopeptide repeat domain 67 159 IPR011990 GO:0005515
Cca07g00445 1077 Gene3D Tetratricopeptide repeat domain 1 64 IPR011990 GO:0005515
Cca07g00445 1077 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 97 195 - -
Cca07g00445 1077 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 194 593 - -
Cca07g00445 1077 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Cca07g00445 1077 Pfam E motif 522 582 IPR046848 -
Cca07g00445 1077 Pfam Domain of unknown function (DUF4283) 718 820 IPR025558 -
Cca07g00445 1077 Gene3D Tetratricopeptide repeat domain 402 590 IPR011990 GO:0005515
Cca07g00445 1077 Gene3D Tetratricopeptide repeat domain 256 401 IPR011990 GO:0005515
Cca07g00445 1077 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Cca07g00445 1077 MobiDBLite consensus disorder prediction 916 938 - -
Cca07g00445 1077 Pfam PPR repeat 406 435 IPR002885 -
Cca07g00445 1077 Pfam PPR repeat 377 397 IPR002885 -
Cca07g00445 1077 Pfam PPR repeat 204 226 IPR002885 -
Cca07g00445 1077 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Cca07g00445 1077 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cca07g00445 1077 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 103 - -
Cca07g00445 1077 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Cca07g00445 1077 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Cca07g00445 1077 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Cca07g00445 1077 TIGRFAM PPR: pentatricopeptide repeat domain 108 141 IPR002885 -
Cca07g00445 1077 TIGRFAM PPR: pentatricopeptide repeat domain 7 40 IPR002885 -
Cca07g00445 1077 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cca07g00445 1077 PANTHER OS07G0578800 PROTEIN-RELATED 1 103 IPR045215 GO:0003723|GO:0009451
Cca07g00445 1077 PANTHER OS07G0578800 PROTEIN-RELATED 97 195 IPR045215 GO:0003723|GO:0009451
Cca07g00445 1077 PANTHER OS07G0578800 PROTEIN-RELATED 194 593 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00445 Cca-Chr7 5908153 5912006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00445 4 583 Glycoside Hydrolase AT3G49170 30.185 5.29e-88 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00445 - - gmx:100787089 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00445 07 5908153 5912006 Cca07g00445 07 5908153 5912006 ECH