Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00418 ATGGGGGCAGAGTCACAAATTCCACGAAGCTTAATCCACAGAATCTACGCTCCATTTGCTAACGAATTTCCTTTTGCAGCGCCCATCTCCTCCTCCAGAACAGATGAACGCGAACTCGTGCGAGGTGTTCTACGAATGCTGCAAGGGTTTTCTTGTTCCCTGTTCTCTTGGGATAACACTTCAAACAGTTTCCGTCCCGAGAGCGGAGTGTACGTGAGTCACCTCTCTCTGAAAAGTCTCCATTGTCTTCTCAATCAGTTTATCCACGCGGCAACGTGTCTCCAATTGGTTGGGATTTCACTCAGTAAAGTTGAAACTGCAGTGCCAAAACCTCCTCCTACTTTGGGCGCATTTGCGTGCTCTGCTTCAGCGTGCCTCAAGCGGTTGCGGaatattgctctgaaggaggaaacgtccacgagcaatgccgatgacataaccactccaaccttgttaggattggctaattcgttatcgagTCTTTGCTCAGGTGCTGAGTTCCTGTTTCAAGTAGTGCATCAGGCCATCCCTGCTGTATACTTTGAGTTTGGTGTGTCTGTACCTGCAGCAGACCTCGCTGTTCATGTGCTTGACTATCTACATATGAAGCTTGATGAAATGTGTCTTGTTCAAGGTGGTGAGGAGGAAGCTTATCAGATGGTGCTTTATATGTATGTTGGAAGCTTGTTGCCATATATTGAGGGTCTCGATTCCTGGCTTTTTGAAGGAATTATTGACGATCCTTTTGGTGAGATGTTCTTTTTTACTAATAAAGAAGTCTCAGTTGATGGGGCTGAGTTCTGGGAGAAGAGTTATTTATTAAGAATGCTACAGCATAGCAAGTTAGATTCAGAATTATCTTCCACAAATCATGTCAACGATTCTGTGCCAGCATCAGATAACAAGGAAACGGACAGGAGGGGTTCCATCCCTTTGTCTAGTACAATTAAAGGAAAAGAGCATAGCAATAGAGACCATCCAGCTTGTCCTCTTTTTATTAAGGATTTAACTAGATCAATAGTTTCTGCTGGGAAATCTTTGCAGCTGATGCGGCATGTACCTAATTCTGCAGTGAATTGTGGCAAAGGAAGTAATTATGAGATTGGAAGCACCAAATGTTTAAACTATGGTTTATATCCTTTTAAGAGAATGGCTGGGCTATCGTTGTCAGAAGTTTTTTCTGTATCACTAGTTGGACTTATTGGTCATGGTGACCATGTTTGTAAGTACTTTTGGCTAGATAACTGGTATGTAAATGAGGAAAAAACAGATAATGAGAATAATGAAAAATTAATTGCTCCACCTCACTCGGAGAAGACTTGGTATAATTTCTTGATTGATACATTATATCAGAAAAGATCAGCTATTTTGAAACTAAATTATGAGGACATAAATAATGACACAAGAGAGCTGGGAGGGGCTACAGTTATTGAAGACGAAGAGCTTCTCAGGTCATCCATAGAAAATCCAGTTATTACTGTATGTCGAACAAGCATTGGAAAGAAAGGGGATGCCATGAAAACATTAAATTTATCTCGAAAGTTCAGCTTGCCTTCATTAAATGATGTGGGTTTAAGAAAGGCTATATTTGGTGGAGAAAGAACAGCATTTTCTGATAGTGAAGGAACAAACTATACTTTTGGCTTTCACTTTGGTGAATCTGAATACCGCCGCTCACAGGACGAGAGAAAGCTGTTAGAAATGTTGTTTCCTTTTCCCACAATTTTGCCTTCGTTTCAGGATGATGTTCCTTTGTCAGAGCTCTTGCCTTTTCAGAGAAACAGCAGTCTTATTTCAAGAGTTCTTCGTTGGATGCAAAAGGTTGACCTAAGAATTACTCCGCTTCCTCTGGTTATTGTGCAGTATTGTCTCACTGTCTACATTCAGAAACAGGTGGATTATATTGGAGTGAATATGTTGTTAAAGTTGATGAACGAATGGAGATTGATGGATGAGCTTGCAGTGTTGAGAGCTATATACTTGCTAGGTTCAGGTGATTTGCTGCAACACTTTTTGACTGTAATTTTCAATAAGTTAGATAAGGGTGAAGCATGGGATGATGATTTTGAATTAAACACGATATTACAGGAATCAATCAGAAATTCTTCTGATTGTATGCTGTTAAGTGCTCCAGATTCCTTGGTAGTGTCGATAACCAAAAATCTTGTTGACAGTGATGAGGAAGCTAGCACAGCTGGTGTTGTTTTGAGTACTCCCCGTCAAAGTCATGTCAATAGCTTTGGAATTAATGGCCTTGATATGCTCAAATTCACGTATAAGGTCCCTTGGCCTCTTGAACTTATTGCAAATACAGAGACAATTAAGAAGTACAACCAGGTGATGCGGTTCTTGTTGAAGGTCAAGCGTGCAAAATTTGTACTGGATAAAGTGCGGAGATGGATGTGGAAGGGTAGGGGATCTGCTACAAACAACAGAAAGTATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCATTTCACCAATATGTGATGGATCGGGTATATCACAGTGCATGGCGTGAACTATGTGAAGGTATGACTGCAGCAAAATCTCTGGATGAAGTCATTGAAGTCCATGAGTCTTACATATTATCAATTCAGCGGCAGTGCTTTGTGGTTCCTGATAAGCTGGGGGCTCTTATTGCCAGCCGCGTCAACAACATCCTTGGCATAGCTTTAGACTTTTATAACATACAACAGACATTAAGTAGCGGTGGAGCTGTTTCTGCAATCAAAGCTAGGTGTGAGATGGAAGTGGACCGGATAGAGAAACAGTTTGATGATTGCATTGCTTTCTTACTTAGGGTTTTATCGTTCAAACTAAATGTCGGGCACTTCCCTCATTTGGCTGATTTGGTGACCAGAATTAACTACAACTATTTCTACATGTCTGCTAATGGAAATTTGATGACTGCCTCCAGTTCTGGAAGTGTTACTTCAAGGTTGGGGAAGAACCCTGGAACCATCTTGAGAAGGGATGAAGCCAAAGTATTCTGGAATGAGATGTTGACGCACTTGTGTGGAATTAAAAGAGTTTCTACCAAGCTTACACCGCCACTGCCACTGCCACTGCTGACCCCTCAAGTAGCCAAAATGTCAATGCCATTGTATCAACAACAAGAGCAACCTCCTCCAGTGAGTGTGGCACAACATTCAGCACATGAGTCCGTTGGTCCTGTGATTGGGGTTCTGGTTGTGATAATTGTGTTGGGAGTCATTGCGGTTATGATTGGAAGGCTTTGCTCGGGAAGAAGAATCATGGGGCATGGCCAATACGACGTAGAAAGCTGGGCAGAGAGAAAATGTTCTTCTTGCATTGATGGAAGAATTAACCTCTCACTACCCACAAGGCCCAGTGAGTCCAGCACCTCACTTCCTGCAACTCCCAAGAGACCAGAACAATCTTCTCAGACATCCACACCTAACCATTGA 3441 0.4086 MGAESQIPRSLIHRIYAPFANEFPFAAPISSSRTDERELVRGVLRMLQGFSCSLFSWDNTSNSFRPESGVYVSHLSLKSLHCLLNQFIHAATCLQLVGISLSKVETAVPKPPPTLGAFACSASACLKRLRNIALKEETSTSNADDITTPTLLGLANSLSSLCSGAEFLFQVVHQAIPAVYFEFGVSVPAADLAVHVLDYLHMKLDEMCLVQGGEEEAYQMVLYMYVGSLLPYIEGLDSWLFEGIIDDPFGEMFFFTNKEVSVDGAEFWEKSYLLRMLQHSKLDSELSSTNHVNDSVPASDNKETDRRGSIPLSSTIKGKEHSNRDHPACPLFIKDLTRSIVSAGKSLQLMRHVPNSAVNCGKGSNYEIGSTKCLNYGLYPFKRMAGLSLSEVFSVSLVGLIGHGDHVCKYFWLDNWYVNEEKTDNENNEKLIAPPHSEKTWYNFLIDTLYQKRSAILKLNYEDINNDTRELGGATVIEDEELLRSSIENPVITVCRTSIGKKGDAMKTLNLSRKFSLPSLNDVGLRKAIFGGERTAFSDSEGTNYTFGFHFGESEYRRSQDERKLLEMLFPFPTILPSFQDDVPLSELLPFQRNSSLISRVLRWMQKVDLRITPLPLVIVQYCLTVYIQKQVDYIGVNMLLKLMNEWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGEAWDDDFELNTILQESIRNSSDCMLLSAPDSLVVSITKNLVDSDEEASTAGVVLSTPRQSHVNSFGINGLDMLKFTYKVPWPLELIANTETIKKYNQVMRFLLKVKRAKFVLDKVRRWMWKGRGSATNNRKYHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMTAAKSLDEVIEVHESYILSIQRQCFVVPDKLGALIASRVNNILGIALDFYNIQQTLSSGGAVSAIKARCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSANGNLMTASSSGSVTSRLGKNPGTILRRDEAKVFWNEMLTHLCGIKRVSTKLTPPLPLPLLTPQVAKMSMPLYQQQEQPPPVSVAQHSAHESVGPVIGVLVVIIVLGVIAVMIGRLCSGRRIMGHGQYDVESWAERKCSSCIDGRINLSLPTRPSESSTSLPATPKRPEQSSQTSTPNH 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00418 1146 Pfam Gamma tubulin complex component N-terminal 40 369 IPR041470 -
Cca07g00418 1146 MobiDBLite consensus disorder prediction 1117 1146 - -
Cca07g00418 1146 Gene3D - 649 964 IPR042241 -
Cca07g00418 1146 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 4 986 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cca07g00418 1146 MobiDBLite consensus disorder prediction 287 324 - -
Cca07g00418 1146 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 4 986 - -
Cca07g00418 1146 Pfam Gamma tubulin complex component C-terminal 649 965 IPR040457 GO:0043015
Cca07g00418 1146 MobiDBLite consensus disorder prediction 1116 1146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00418 Cca-Chr7 5538883 5549709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00418 2 696 Glycosyltransferase AT1G20570 47.772 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00418 K16572 - gmx:100782299 1739.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00418 07 5538883 5549709 Cca07g00418 07 5538883 5549709 ECH