Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00388 ATGACATCGGCCAAATGGTTATTCAAGATAACCTTCCCATGCTTAACCCCTCCCAGGCCCAAATCATTACCGGATATTGCCGGTGACACTGCAGCTGCTCCTACTACACCACCACCCCTAATTGGGCCATCGGGCCCAAAAGACGATGACAGGCACAGGCTGAAAGACGTTTTTGATCACTTGGACATTGACAAAGACGGGAAGATATCGAGCACGGAACTAATGGATTACTTTGCGTCCGTGGGTGAGTCCCTGAGCCGAAAAGTGGCAGAGAGGGTGGTCAACGAGTTTGACTCTGACGGTGACGAGTTACTCGATTTCGGAGACTTCGTGAAACTGATGAAGCAAGAGGAGAGTGAGGAGTTGGAGGATGTTCTGAGAAGCGCGTTCCAGATGTTTGAGGTTGAGAAAGGGTGCGGTTGCATAACGCCCCAGGGCTTGCAACAAATGTTGCGCCTACTCGGAGACGTTAAATCCCACGATGAGTGCGCGGCCATGATTCGACCCTTCGATCTTGACGGTAATGGCTTCCTTGATTTTCACGAATTTCAGCAGATGATGTCCCCAGCTTAA 573 0.5061 MTSAKWLFKITFPCLTPPRPKSLPDIAGDTAAAPTTPPPLIGPSGPKDDDRHRLKDVFDHLDIDKDGKISSTELMDYFASVGESLSRKVAERVVNEFDSDGDELLDFGDFVKLMKQEESEELEDVLRSAFQMFEVEKGCGCITPQGLQQMLRLLGDVKSHDECAAMIRPFDLDGNGFLDFHEFQQMMSPA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00388 190 MobiDBLite consensus disorder prediction 19 50 - -
Cca07g00388 190 Gene3D - 47 116 - -
Cca07g00388 190 PANTHER CALMODULIN 35 188 - -
Cca07g00388 190 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Cca07g00388 190 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Cca07g00388 190 Gene3D - 117 190 - -
Cca07g00388 190 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Cca07g00388 190 ProSiteProfiles EF-hand calcium-binding domain profile. 158 190 IPR002048 GO:0005509
Cca07g00388 190 Pfam EF-hand domain pair 124 188 IPR002048 GO:0005509
Cca07g00388 190 Pfam EF-hand domain pair 53 115 IPR002048 GO:0005509
Cca07g00388 190 SUPERFAMILY EF-hand 32 187 IPR011992 -
Cca07g00388 190 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Cca07g00388 190 PANTHER CALCIUM BINDING PROTEIN 35 188 - -
Cca07g00388 190 SMART efh_1 162 190 IPR002048 GO:0005509
Cca07g00388 190 SMART efh_1 53 81 IPR002048 GO:0005509
Cca07g00388 190 SMART efh_1 89 117 IPR002048 GO:0005509
Cca07g00388 190 CDD EFh 53 115 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00388 Cca-Chr7 5088801 5089568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00388 34 188 EF-hand Containing Proteins AT3G50770 46.746 1.33e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00388 K13448 - gmx:100775336 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00388 07 5088801 5089568 Cca07g00388 07 5088801 5089568 ECH