Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00378 ATGCCCGTCGCCACGAAGCTCGAAACGCGAGGCATTTTGAAACCTGGCGGAAACAGAGTAAGCGTTTCGGGAGAGGCTATAGAGAAGAAGCTGAAGCCCAAGGTCCCTGACTCCGCTCTGCAAAGGAACGTCAAGCGTAACCCCGTCAGGCTTCTGCCTCCCAAGACCTGTGAATGGATCACTCCTAACTCTGCAGATCCCCTTTATATTGCTTTCCATGATGAAGAATGGGGTGTTCCAGTTGATGATGATAGAAAGCTATTTGAGCTTCTTGTCTATTCACAAGCATTGGCAGAACGCAGTTGGCCAGCAATTCTTAACCAGAGAGACATATTCAGGCATTTTTTTGAAAATTTTGAACCATCATCAGTTGCACAGTTTACTGAGAAGAAATTGCTCTCGCTGAAAATAAACGGCAACTCGTTGTTATCAGAACCAAAGCTCCGTGCCATTGTGGAAAATGCTAAAAAATTACTTAAGGAGTTTGGTTCATTTAGCAATTACTGCTGGAGATTTGTTAACCACAAACCGATAAGAAATGAATTCAGATATGGACGTCAAGTACCCGTGAAGACTCCAAAAGCAGAAGTCATTAGCAAGGACATGATGCGTAGAGGTTTCCATTGTGTGGGACCCACTGTAGTTTATTCGTTCATGCAAGTAGCGGGACTCGTTAATGACCACCTATTAACATGCTTCAGGCACAACGAATGCAAAGTGGCAACCAAAAACGAATTTAAAAACGAGGTTAAGGAGAATGGTACAAAATGA 771 0.4358 MPVATKLETRGILKPGGNRVSVSGEAIEKKLKPKVPDSALQRNVKRNPVRLLPPKTCEWITPNSADPLYIAFHDEEWGVPVDDDRKLFELLVYSQALAERSWPAILNQRDIFRHFFENFEPSSVAQFTEKKLLSLKINGNSLLSEPKLRAIVENAKKLLKEFGSFSNYCWRFVNHKPIRNEFRYGRQVPVKTPKAEVISKDMMRRGFHCVGPTVVYSFMQVAGLVNDHLLTCFRHNECKVATKNEFKNEVKENGTK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00378 256 SUPERFAMILY DNA-glycosylase 56 238 IPR011257 GO:0003824|GO:0006281
Cca07g00378 256 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN 37 253 - -
Cca07g00378 256 Gene3D Hypothetical protein; domain 2 55 236 - -
Cca07g00378 256 PANTHER OS04G0501200 PROTEIN 37 253 - -
Cca07g00378 256 Pfam Methyladenine glycosylase 65 235 IPR005019 GO:0006284|GO:0008725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00378 Cca-Chr7 4909337 4911827 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00378 K01246 - gmx:100801163 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00378 07 4909337 4911827 Cca07g00378 07 4909337 4911827 ECH