Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00368 ATGGCTCTCATCTCCGACACCCAGCCATGGAAGGACCTCAAGGCACATGTGGACGACATCAACCAAACGCATCTACGCGATCTATTGACCGACGATAACCGGTGCCAGTCCATGCTGGTTGACTTCGATGACATTCTGCTCGACTATTCGAGGCAACAAGCCACTCCTGAAACTATCCAGAAGCTCTTTCAATTAGCAGAGGCTGCATCGCTCAAAGAAAAGATTAACCGCATGTACAGCGGGGAACATATAAACAGCACGGAAGATAGGTCAGTGCTTCACGTGGCCCTTCGTGCTTCAAGGGATGCTGTCATACAGAGTGATGGGAAGAATGTTGTCCCTGAAGTTTGGAAAGTTCTTGACCAGATTCAGGAGTTCTCTGAGCGGGTTCGCAATGGTTCTTGGGTTGGTGCTACAGGGAAGCCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTAGGTCCCCTGTTTGTACACACTGCTCTTCAAACGGACCCTGAAGCTATTGAATCCGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCTATTGACGTTGCTAGAAATATCACAGGATTAAATCCTGAAACAACTCTTGTTGTGGTTGTTTCAAAGACTTTTACAACAGCTGAAACCATGCTGAATGCACGAACTCTTAGAGAATGGATTTCATCTGCACTTGGGCCCTCTGCAGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCACGCTTGTGGAAAAGTTTGGAATTGATCCTAACAATGCTTTTGCATTTTGGGATTGGGTCGGTGGCCGGTATAGTGTTTGCAGCGCTGTTGGGGTTTTGCCATTATCTCTACAATACGGTTTCTCAGTAATAGAGAAGTTTTTAAGGGGTGCTTCAAGCATTGATCAACATTTCTATTCACAGCCATTTGAAAAGAATATACCTGTGCTTCTGGGTTTGTTGAGCATATGGAATGTTTCATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGCCAAGCTCTGGAGAAGTTTGCCCCACACATTCAACAGGTTAGCATGGAAAGTAACGGCAAGGGTGTTTCAATTGATGGTGTTCCTCTACCATTTGAGGCTGGTGAAATTGATTTTGGTGAACCAGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGCGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTCTTTCTGAAAGGTGAAGTGGTGAGTAACCATGACGAGCTAATGTCCAACTTTTTTGCACAGCCTGATGCCCTTGCATATGGGAAGACAGCAGACCAGCTGCAAAAGGAGAATGTTTCCCCACACCTTATTTCTCACAAGACATTCAGTGGCAATCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTACAATATTGGGCAGTTGTTGGCAATCtatgaacacagaattgctgtcgagggcttcatttggggaatcaattcttttgatcagtggggagtagagctggggaagTCACTGGCTACTCAAGTCAGAAAGCAACTTAATGCATCTCGTACTAAAGGTGAACCAGTTCAGGGCTTTAATTTCAGTACTTCAACAATGTTGACAAGATATCTTCAGGCAAGTTCAGATGTCCCAGCAGATCTGCCAACTGCTTTACCGAAGATATAG 1698 0.4299 MALISDTQPWKDLKAHVDDINQTHLRDLLTDDNRCQSMLVDFDDILLDYSRQQATPETIQKLFQLAEAASLKEKINRMYSGEHINSTEDRSVLHVALRASRDAVIQSDGKNVVPEVWKVLDQIQEFSERVRNGSWVGATGKPLKDVVAIGIGGSFLGPLFVHTALQTDPEAIESARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVIEKFLRGASSIDQHFYSQPFEKNIPVLLGLLSIWNVSFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNFFAQPDALAYGKTADQLQKENVSPHLISHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKGEPVQGFNFSTSTMLTRYLQASSDVPADLPTALPKI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00368 565 CDD SIS_PGI_1 117 285 IPR035476 -
Cca07g00368 565 ProSitePatterns Phosphoglucose isomerase signature 2. 496 513 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 4 552 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 ProSitePatterns Phosphoglucose isomerase signature 1. 266 279 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 Pfam Phosphoglucose isomerase 48 543 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 Gene3D - 10 505 - -
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 146 165 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 262 280 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 340 361 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 464 482 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 482 496 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PRINTS Glucose-6-phosphate isomerase signature 496 509 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 4 552 - -
Cca07g00368 565 SUPERFAMILY SIS domain 5 551 IPR046348 GO:0097367|GO:1901135
Cca07g00368 565 Gene3D - 506 551 IPR023096 GO:0004347|GO:0006096
Cca07g00368 565 Gene3D - 94 293 - -
Cca07g00368 565 Hamap Glucose-6-phosphate isomerase [pgi]. 42 523 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 7 550 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cca07g00368 565 CDD SIS_PGI_2 333 519 IPR035482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00368 Cca-Chr7 4771442 4779323 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00368 K01810 - gmx:100807719 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00368 07 4771442 4779323 Cca07g00368 07 4771442 4779323 ECH