Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00342 ATGGGTTCTCTTAAAGGGCCAGTTGTTTGCCACACTGTCCTTGCGAAGGTGTGCAGTGTTCCTATGCCTATGAACGCTCGGTGTGTTAGAAGTGATTTTTGGGGACTCGCTTGTACCAAACCTAAGGCCAGTGTGCTTTCTTGCCACATAAACGCGCGAAAGTGCAAGACTGTGCATTGCAGTTTCAACTTGCCCTCTGATGGCACCGGAAACATGGCTGAGAATTTTGATGAAAAGGATGAAGATTATGTTAACTCCAGTGTTGTTGAAGCTGTTGAGGTGAAGAGTGGGGCAGATGGTTTCCTGATTAAAATGAGGGATGGTAGACAATTGCGATGCACCCATAATAACCCTCATGGAGGACTTCTTCCAGATTATGCACCCCATCCTGCTATTGTGTTGAAGATGGAGGATGGGACTGGTCTACTTCTCCCCATAATTGTTTTGGAGATGCCTAGCGTCTTACTGATGGCAGCAGTGCGCAATGTTCAAATAGCTAGACCTACTTTATACCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAGTCAGAGTTGTCAGAGTTACAAAGAGAGTTCACGAAGCATATTTTGCCCAGTTATACCTTTCCAAGGCATTTACTAATTCTTCACTCTTCTTTTCCACCCCCTCCCAAAACAAAATCCTCCAAAGTGTCGGAAATGAGGCGGTATGTATGAGCTTTGACCTTCGACCTTCGGATGCTATCAACATTGCGGTGAGATGCAAGGTGCCTATACAAGTCAACAAGTATTTGGCATACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACACAATCTCCTGGTTCAGATGGCATATTGTTTACTGAATTGGACCGCCCAAGTGGTAAGCCTTGTATTGAAACCAAGGAGTTCAATCTTTTGCACAACATGTTGAAAGCTGTTGTAGAAGAGCGCTATCAAGATGCTGCTTTATGGAGAGACAAACTCAATCAACTTAGGGCTGGAAAAAATGTAAACAACAGATCATGGACACTGTAA 1035 0.4386 MGSLKGPVVCHTVLAKVCSVPMPMNARCVRSDFWGLACTKPKASVLSCHINARKCKTVHCSFNLPSDGTGNMAENFDEKDEDYVNSSVVEAVEVKSGADGFLIKMRDGRQLRCTHNNPHGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQVVKEMIDKMGYEVRVVRVTKRVHEAYFAQLYLSKAFTNSSLFFSTPSQNKILQSVGNEAVCMSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTQSPGSDGILFTELDRPSGKPCIETKEFNLLHNMLKAVVEERYQDAALWRDKLNQLRAGKNVNNRSWTL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00342 344 SUPERFAMILY Hypothetical protein TM0160 113 271 IPR036104 GO:0004518
Cca07g00342 344 Gene3D Bifunctional nuclease domain 120 273 IPR036104 GO:0004518
Cca07g00342 344 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 113 268 IPR003729 GO:0004518
Cca07g00342 344 Pfam Bifunctional nuclease domain 132 262 IPR003729 GO:0004518
Cca07g00342 344 PANTHER NUCLEASE IN BASAL DEFENSE RESPONSE PROTEIN 1 339 - -
Cca07g00342 344 PANTHER VON HIPPEL-LINDAU PROTEIN 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00342 Cca-Chr7 4548039 4551253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00342 - - gmx:100807950 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00342 07 4548039 4551253 Cca07g00342 07 4548039 4551253 ECH