Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00339 ATGATTTTGCAGTTCTTCGTGCTTTCCCAGAGAGGCGATAACATCGTCTACCGTGACTATCGCGGTGAAGCTCAAAAAGGTAGCGCTGAGACATTTTTCCGAAAAGTAAAGTTCTGGAAAGAGGATGCTGAGGGAGATGCTCCACCTGTTTTTAATATAGATGGTGTGAACTACTTCCATGTGAAGGTTGCTGGATTGCTATTTGTTGCTACAACTAGAGTCAATGTCTCCCCTTCCCTTGTTTTGGAACTTCTACAAAGAATTGCACGTGTCATCAAAGATTACCTTGGTGTTCTCAATGAAGATTCCTTTCGAAAGAACTTCGTGCTCGTGTATGAGTTGCTCGATGAAGTCATTGATTTTGGTTATGTGCAAACAACATCCACTGAGGTTTTGAAGTCATATGTTTTCAATGAGCCAATTGTGATTGATGCTGCACGGATGCCTCCCCTTGGTCCTGCTTCCATTTTTATGCAAGGTAGTAAACGAATGCCAGGTACAGCTATTACAAAGTCTGTGGTTGCTAATGAACCTGGTGGTAGGAAGAGGGATGAGATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACCTTCAACTCTAGTGGATTTATACTTACAAGTGAGATTGATGGCACCATTCAAATGAAGAGTTATCTTACTGGTAACCCGGAGATTCGACTTGCTCTGAATGAGGACCTAAGTATAGGAACAAGTGATTATAGAGGTTCAGGTGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCAGTTCACCTTGACAGTTTTGATGTTGACAGAACTTTGTCATTGGTACCACCAGATGGTGAATTTCCAGTCATGAATTATCGTATGACTCAACCATTTAAACCACCCTTTCGTATTAATGCATTGATTGAAGAAACAGGATCCCTGAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGTGTCAATGCTAACAGTGTTCTAATACAGATGCCTCTGCCATCATTTACTGCTCGTGTTAATTTTGAGTTAGAACCTGGAGCAGTGGGACACACCACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGCCTGAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGAGCAAAGCTGACATTTTCACAGGAGTTACATGGAAATATAATGAAAGAAGCAGGGCCTGTTAGCATGACTTTCATTATACCTATGTACAATTCTTCAAGGCTTCAGGTGAAGTATTTGCAGATAGCAAAGACATCAAAAACACAAAATCCTTATCGTTGGGTTAGATATGTAACCCAAGCAAACTCATACGTTGCCCGGTTGTAA 1332 0.4054 MILQFFVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDAEGDAPPVFNIDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVIDAARMPPLGPASIFMQGSKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRINALIEETGSLKAEVTIKVRAEFNSSVNANSVLIQMPLPSFTARVNFELEPGAVGHTTDFKEANKRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPVSMTFIIPMYNSSRLQVKYLQIAKTSKTQNPYRWVRYVTQANSYVARL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00339 443 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Cca07g00339 443 Gene3D Mu homology domain, subdomain B 182 438 - -
Cca07g00339 443 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 443 - -
Cca07g00339 443 Pfam Adaptor complexes medium subunit family 182 442 IPR028565 -
Cca07g00339 443 CDD AP-4_Mu4_Cterm 178 443 - -
Cca07g00339 443 CDD AP4_Mu_N 4 143 - -
Cca07g00339 443 Pfam Clathrin adaptor complex small chain 4 132 IPR022775 -
Cca07g00339 443 PIRSF AP_complex_mu 1 443 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca07g00339 443 Gene3D Mu homology domain, subdomain B 290 442 - -
Cca07g00339 443 PANTHER AP COMPLEX SUBUNIT MU 2 443 - -
Cca07g00339 443 Gene3D - 1 141 - -
Cca07g00339 443 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca07g00339 443 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca07g00339 443 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca07g00339 443 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca07g00339 443 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 442 IPR036168 -
Cca07g00339 443 ProSiteProfiles Mu homology domain (MHD) profile. 183 442 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00339 Cca-Chr7 4505076 4514182 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00339 K12402 - gmx:100800985 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00339 07 4505076 4514182 Cca07g00339 07 4505076 4514182 ECH