Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00330 ATGTTGATTCGACGTTTGCCTTGGACGGCGATTTCCATGGCAGCACCACTTCCCTCCTTTTCCGGCGCCACCACCGGATTTTGCATTCCCATTCGCAAGCAACTTTCCTCTTCTCTCTTCTCCTTCTGCTCTACCTCCGGCGTCAATCTCCCTCTGCAACATGGTCACGAAGCCGATACTCGTCATTCGCAGTCTCTGAAACCCGGTCTTTACCTCGTCGGAACACCGATCGGAAATCTCGAGGACATCACTCTGAGGGCTCTTCGCGTGCTGAACTCCGCTGACGTCATACTCTCAGAAGACACGAGGCACTCTGGGAAGTTGCTTCATCACTACAACATCAAAACACCTCTTATGAGTTATCACAAATTCAACGAATCTCAAAGGGAACAGGTTGTGCTTAGGAGGTTGAAGCAGGGTGAGATTGTGGCTCTTATAAGTGATGCTGGAATGCCAGGCATCAGTGATCCTGGTACGGAGTTGGCCAAATTGTGTGTTAGTGAGAATATCCTGGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTGTCGGCTCTTTCTGCCTCGGGTTTACCTACTGATGAATTTACATTTGTTGGTTTTCTTCCTAAACATTTGGGGTCGAGAAGGAAAAGACTTATGGTTTCGGCTGATCAAACTACAACACAGATATTTTATGTTCCTCCTCACAAGCTTGTTCAGTTCCTCGAGGAGAGTTCTTCAATTTTTGGTGATGCAAGGTACCGAGAGTTGGCTTAA 756 0.4788 MLIRRLPWTAISMAAPLPSFSGATTGFCIPIRKQLSSSLFSFCSTSGVNLPLQHGHEADTRHSQSLKPGLYLVGTPIGNLEDITLRALRVLNSADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQVVLRRLKQGEIVALISDAGMPGISDPGTELAKLCVSENILVVPIPGPCALVSALSASGLPTDEFTFVGFLPKHLGSRRKRLMVSADQTTTQIFYVPPHKLVQFLEESSSIFGDARYRELA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00330 251 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 246 - -
Cca07g00330 251 Gene3D - 177 251 IPR014776 GO:0008168
Cca07g00330 251 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 246 IPR008189 GO:0008168
Cca07g00330 251 CDD RsmI 71 250 IPR008189 GO:0008168
Cca07g00330 251 SUPERFAMILY Tetrapyrrole methylase 68 246 IPR035996 GO:0008168
Cca07g00330 251 Gene3D - 54 176 IPR014777 GO:0008168
Cca07g00330 251 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 147 158 IPR018063 GO:0008168
Cca07g00330 251 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 70 237 IPR000878 GO:0008168
Cca07g00330 251 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 70 247 IPR008189 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00330 K07056 - gmx:100819709 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00330 07 4415012 4419375 Cca07g00330 07 4415012 4419375 ECH