Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00329 ATGGCCTTCAACAACAACAAGCATGTTCTGTTAACATTCGCAATATGCTGTTTAATAGTAACGGTGGGACTAACGGTGGTCCCAGAGCCGCTCGATGTTGGACTCGAGGGTCGACTGAGCGTGAACACGCGGGAGCTGGAAGCGGTTTCGGTGGACTTCGGGAGGCTGAGCAGAGGGGAGGCTTGGGCGGTGGTGCAGCCCGCGACGGCGGAGGACGTGGTGCGGGTGGTGAAGGCGGCGTTCGAAGCGCCGTTCGCGGTGTCGGCAAGGGGGCACGGGCACTCGATAAACGGGCAAGCCCTGATAAAGGAGAAGAAAGGAGTGGTGATTGAGATGGTAAAAGGTGGTGGTAGCAACAACGGCGACAAGGAGAATAGTATAAGAGTGAGTGAGAAAGGAATGTATGTGGATGTGTGGGGTGGGAGGTTGTGGATAGACGTTTTGAGTGCAACATTGGAGTATGGGCTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTCTCCAACGCTGGAATTAGTGGACAAACCTTCAATCACGGTCCTCAGATCAGCAATGTTTATGAGCTCGATGTCGTTACAGGAAAGGGTGAGCTGGTGACATGTTCAGAAGATCGTAACTCGGAGTTGTTCCATGCTGTTCTTGGAGGTCTTGGACAATTTGGAATCATTACAAGGGCTAGAATTGCTCTCGAACCAGCCCCTCACAGAGTTCGGTGGATAAGAGTACTGTATTCGAATTTTGCAACGTTTTGTAAAGACCAGGAGTATCTGATATCTATGCATGGGAAACCAGGAAATGAGAGATTCGATTATGTGGAAGGTTTCGTGATCGTTGATGAAGGGTTGATCAATAATTGGAGGTCTTCGTTCTTTTCAGCAAGTAACCCTGTTAAAATCACTTCTCTCAAAGCTGACGGAGATGTTTTGTACTGTTTGGAGATTACCAAAAATTACAACCAAGGCAACGCAGATTCTGTTGATGAGGAAATACAATCTCTATTGAAGAAGTTGGATTTTATACCAACATCAGTGTTCACAACGGACTTGCCTTACTTGGATTTTCTGGATCGAGTACATAAGGCAGAGCTTAAGCTTAGATCCAAGGGTTTATGGGACGTGCCTCATCCATGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGCGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTTGGAAATAAGACAAGTGGGCCCATCCTCATCTACCCCATGAACAAAAACAAgtgggaccaaaggagctcggtggtgacaccggaagaggatgtgttttacctggtggcatttctgagatcagcattggatactgagacgctggagtatctgagtaatgagaaccgtcagattgtgagattctgccatgattcggagatcaaggtgaaacagtacctgccccattacactacgcaccaggagtggatggaccactttggcgataagtggacccaattcagtgccaggaagatgaaattcgatcctcgccaaatcttggccacaggccagcaaatatttcAATTTGATCCCTCCAACCCCCTCACCCTCACCAACTATATTTAG 1596 0.3916 MAFNNNKHVLLTFAICCLIVTVGLTVVPEPLDVGLEGRLSVNTRELEAVSVDFGRLSRGEAWAVVQPATAEDVVRVVKAAFEAPFAVSARGHGHSINGQALIKEKKGVVIEMVKGGGSNNGDKENSIRVSEKGMYVDVWGGRLWIDVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQISNVYELDVVTGKGELVTCSEDRNSELFHAVLGGLGQFGIITRARIALEPAPHRVRWIRVLYSNFATFCKDQEYLISMHGKPGNERFDYVEGFVIVDEGLINNWRSSFFSASNPVKITSLKADGDVLYCLEITKNYNQGNADSVDEEIQSLLKKLDFIPTSVFTTDLPYLDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIADFDKGVFKGILGNKTSGPILIYPMNKNKWDQRSSVVTPEEDVFYLVAFLRSALDTETLEYLSNENRQIVRFCHDSEIKVKQYLPHYTTHQEWMDHFGDKWTQFSARKMKFDPRQILATGQQIFQFDPSNPLTLTNYI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00329 531 Gene3D - 112 241 IPR016169 -
Cca07g00329 531 SUPERFAMILY FAD-linked oxidases, C-terminal domain 240 517 IPR016164 GO:0003824|GO:0050660
Cca07g00329 531 PANTHER GULONOLACTONE OXIDASE 8 518 - -
Cca07g00329 531 Pfam FAD binding domain 63 208 IPR006094 GO:0050660
Cca07g00329 531 Gene3D - 43 517 IPR016167 -
Cca07g00329 531 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 240 517 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca07g00329 531 Gene3D - 242 476 IPR016170 -
Cca07g00329 531 SUPERFAMILY FAD-binding/transporter-associated domain-like 36 238 IPR036318 GO:0050660
Cca07g00329 531 ProSiteProfiles PCMH-type FAD-binding domain profile. 57 239 IPR016166 GO:0071949
Cca07g00329 531 PANTHER CYTOKININ OXIDASE 5-RELATED 8 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00329 Cca-Chr7 4405118 4413706 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00329 K00279 - gmx:100790584 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00329 07 4405118 4413706 Cca07g00329 07 4405118 4413706 ECH