Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00325 ATGACTCGTCCTTTACAATTCCTCTCTCTGATTCTCCTTTTCGCACTTTTGTCTCTGGCCACTGCCTCCCAAGTCTTCGAAAGGTGGTGCAAGGAACACGGCAAAACCTACTCTTCCGAGGAACAGAAACGGTACAGGCTCAAAGTGTTCGAGGACAACTATGCCTTTGTCGCCGAACACAACCGAAACGCCAATACTTCCACCTACACCCTCTCCCTCAACGCTTTCGCCGATCTCACTCACCATGAATTCAAAACCTCTCGTCTTGGTCTCGCCCTTCCCCCTTCCTTGCTGCGATTCAAACGTCCCCGGAATCAACAACCCCCTCACCTTCTTCAagttccttccgagatcgattggagaaagagtggggcagttacacccgtcaaggaccaaggaagctgtgGTGCCTGTTGGGCGTTCTCAGCTACCGGTGCTATTGAAGGTATAAATAAGATTGTCACAGGGTCTCTTGAAAGCCTTtctgaacaagagctgatagattgtgatagatcctacaacagcggttgtgaaggtggactcatggattatgcttaccaatttatcattgacaacggtgggattgacaccgaggatgattatccatatcaagTTCGGGAACGGACTTGCAATAAGGACAAGTTAAGAAGGCGTGTTGTTACAATTGATGACTATGTTGATGTGCCTCTGAATGAGGAAGAGTTACTAAAGGCTGTTGCAACACAGCCTGTAAGTGTAGGGATATGTGGGAGTGAAAGAGCATTCCAGTTGTACTCAGAGggtatcttcaccggtccatgttcaactgctttggatcatgcagtattgatagtaggatatggttcagaaaatggagttgattattggatcgtaaagaactcatggggaaaatattggggaatgaatggttacatACACATGATACGAAACAGTGGAGATTCCAAAGGGATATGTGGAATCAACACATTAGCTTCATATCCTATCAAGACCAAGCCTAATCCCCCTATCCCTCCTCCCCCAGGTCCTGTAAGATGTAATCTGTTTACTCATTGTTCACAAGGAGAAACATGTTGCTGTGCTAGGAGCTTTCTTGGAATATGCTTTTCTTGGAAATGCTGTGGATTAACTTCTGCAGTCTGTTGTAAAGACAAGCGCCACTGTTGCCCCCAAGATTATCCAATTTGTGATACAGGAAAGGGCCAATGTTTAAAGATGATTGCAAATGGGACAACAACAATCGCATCTGAGAACCAGGATTTTTCCCACCAGCCAAGAGGTTGGACATCTCATTAA 1293 0.3434 MTRPLQFLSLILLFALLSLATASQVFERWCKEHGKTYSSEEQKRYRLKVFEDNYAFVAEHNRNANTSTYTLSLNAFADLTHHEFKTSRLGLALPPSLLRFKRPRNQQPPHLLQVPSEIDWRKSGAVTPVKDQGSCGACWAFSATGAIEGINKIVTGSLESLSEQELIDCDRSYNSGCEGGLMDYAYQFIIDNGGIDTEDDYPYQVRERTCNKDKLRRRVVTIDDYVDVPLNEEELLKAVATQPVSVGICGSERAFQLYSEGIFTGPCSTALDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHMIRNSGDSKGICGINTLASYPIKTKPNPPIPPPPGPVRCNLFTHCSQGETCCCARSFLGICFSWKCCGLTSAVCCKDKRHCCPQDYPICDTGKGQCLKMIANGTTTIASENQDFSHQPRGWTSH 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00325 430 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 271 281 IPR025660 -
Cca07g00325 430 SMART GRAN_2 345 402 IPR000118 -
Cca07g00325 430 Gene3D Cysteine proteinases 16 330 - -
Cca07g00325 430 Pfam Cathepsin propeptide inhibitor domain (I29) 26 84 IPR013201 -
Cca07g00325 430 Gene3D Granulin 342 411 IPR037277 -
Cca07g00325 430 SUPERFAMILY Granulin repeat 342 375 - -
Cca07g00325 430 Pfam Papain family cysteine protease 114 328 IPR000668 GO:0006508|GO:0008234
Cca07g00325 430 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Cca07g00325 430 PRINTS Papain cysteine protease (C1) family signature 273 283 IPR000668 GO:0006508|GO:0008234
Cca07g00325 430 PRINTS Papain cysteine protease (C1) family signature 288 294 IPR000668 GO:0006508|GO:0008234
Cca07g00325 430 Pfam Granulin 356 403 IPR000118 -
Cca07g00325 430 CDD Peptidase_C1A 115 327 IPR039417 -
Cca07g00325 430 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Cca07g00325 430 SMART pept_c1 114 328 IPR000668 GO:0006508|GO:0008234
Cca07g00325 430 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 17 362 - -
Cca07g00325 430 SMART Inhibitor_I29_2 26 84 IPR013201 -
Cca07g00325 430 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 288 307 IPR025661 -
Cca07g00325 430 PANTHER OS05G0508300 PROTEIN 17 362 - -
Cca07g00325 430 SUPERFAMILY Cysteine proteinases 23 328 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00325 Cca-Chr7 4342282 4345471 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00325 - - gmx:100805596 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00325 07 4342282 4345471 Cca07g00325 07 4342282 4345471 ECH