Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00324 ATGGACCTCGATCCTCGTCAATACGAAAACGTTGCTATAAATGATAATGACATCCACAATATTGTTCTGTCATATCTTATACATAATTGCTATAAAGAATCAGTGGAATCATTCATTGCTTGCACTGGGACGAAGCAGCCCGTGGATTATTTGGAGGACATGGACAAAAGGAAAAGAATCTTTCACTTTGCACTAGAGGGTAATGCACTCAAGGCAATTGAGCTTACTGAACAGCTGGCACAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAACTTGTCTGCTCTAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTCGGAAAGGAGCACAAATATATGGAAAAGCTTGAACTGCCAATGTTGCAGGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAAAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCTATTCTTGCACACTTGAGTCTTCCCAGTTACACAGCAATGGAGAAGCTAATACAGCAGGCTACGGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGGCCTCCGCCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA 663 0.4148 MDLDPRQYENVAINDNDIHNIVLSYLIHNCYKESVESFIACTGTKQPVDYLEDMDKRKRIFHFALEGNALKAIELTEQLAQDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLSPFGKEHKYMEKLELPMLQDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLSLPSYTAMEKLIQQATVVRQCLSQEAGKDGPPPFSLKDFLKS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00324 220 SMART toby_final6 106 206 IPR013144 -
Cca07g00324 220 Pfam CTLH/CRA C-terminal to LisH motif domain 54 197 IPR024964 -
Cca07g00324 220 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Cca07g00324 220 PANTHER RAN BINDING PROTEIN 9-RELATED 8 219 - -
Cca07g00324 220 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Cca07g00324 220 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 8 219 - -
Cca07g00324 220 SMART ctlh 53 110 IPR006595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00324 K23338 - gmx:100800484 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00324 07 4330248 4333406 Cca07g00324 07 4330248 4333406 ECH