Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00316 atggatgaggagaACGGTTACAGTGGGAGTAGCAGCTCTAACTTGGAGACTACAAAGGCTGAGAGATCGGTGTGGCTGATGAAGTGTCCTTTGGTCGTCGCCAAGTCATGGCAGACTCATCCTCCTTCTCAACCTCTCGCTAAGGTTGTCCTCTCCCTCGATCCTCTCCACCCTGAGGAGGATGATCCCTCTGCAGTTCAGTTTACAATGGAGATGGCTGGCTCTGATGCTGTGAATATGTCAAAAACTTATTCATTGAATATGTTTAAAGACTTCGTTCCTATGTGCGTCTTCTCTGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTACGGTAAATTGTGCCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCTGGGATGATTGGTCTAGTTTCATCCAATGCCAAGGACAAGAAGAAGACACAGCCAGTCAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCGCAATTCTTGAAAGAGATCCTGAATGAACTGTGTGTGTACAATAAAAGGGGCGCCAATCAAGGAACTTACGAGCTGAAGCCAGAGTACAAGAAATCTGTTGAAGACACTAGCGCTGAATAA 789 0.4347 MDEENGYSGSSSSNLETTKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMAGSDAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNAKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00316 262 Pfam TFIIF, beta subunit N-terminus 21 140 IPR040504 -
Cca07g00316 262 SUPERFAMILY "Winged helix" DNA-binding domain 188 254 IPR036390 -
Cca07g00316 262 Gene3D - 188 255 IPR036388 -
Cca07g00316 262 CDD TFIIF_beta 14 121 - -
Cca07g00316 262 MobiDBLite consensus disorder prediction 175 192 - -
Cca07g00316 262 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 6 260 IPR003196 GO:0005674|GO:0006366|GO:0006367
Cca07g00316 262 SUPERFAMILY Rap30/74 interaction domains 12 122 IPR011039 GO:0006367
Cca07g00316 262 Pfam TFIIF, beta subunit HTH domain 190 253 IPR040450 -
Cca07g00316 262 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 6 260 - -
Cca07g00316 262 MobiDBLite consensus disorder prediction 168 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00316 Cca-Chr7 4232282 4237306 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00316 K03139 - gmx:100784080 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00316 07 4232282 4237306 Cca07g00316 07 4232282 4237306 ECH