Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00314 ATGGAGGAAGAGTTCATAAAATTCCCCCAAAGGCCAAAATATCCATCCCCTTTTCTCTCTCACCTTTCTATTCCCCCAATGGCTAATCCTTCACTCTACTTTCTCTCCACTCTCCTCCTTTTCTCCGTCGCTGTGGCAACCGCCGACCGGATCGGCGACGAAGAAGACCTTCTGATCCGTCAAGTGGTGCCTGGTGCGGAGGACCACTTGCTCAACGCCGAGCACCACTTCTCCGCCTTCAAGACCAAGTTCGCCAAGACCTACGCCACGCAGGAGGAGCACGACCATCGGTTCCGCGTCTTTAAGAGCAACTTGCTCCGAGCCAAGTCTCATCAAAAGCTCGATCCTTCCGCCGTCCACGGCGTCACAAGGTTCTCCGATCTCACTCCGTCGGAGTTCCGCAGCCAGTTCCTCGGCCTCAAGCCGCTCCGTCTTCCCTCCGACGCTCAAAAGGCTCCGATCCTGCCGACCAACGACCTACCTACCGATTTCGATTGGCGCGACCACGGAGCTGTTACTGGCGTCAAGAACCAGGGTTCGTGTGGATCGTGTTGGTCATTTAGCGCCGTAGGAGCGTTGGAAGGTGCTCATTTTCTCGCCACCGGTGAGCTAGTGAGCCTTAGTGAACAACAACTAGTGGATTGCGATCATGAGTGTGATCCGGAAGAGCGTGGAGCGTGTGACTCGGGCTGTAACGGTGGGTTGATGACAACTGCTTTTGAGTACACACTCAAGGCTGGTGGACTAATGCGAGAAGAGGAATATCCTTACACTGGAAGAGACCGTGGCACCTGCAAATTTGACAAGAGCAAAATTGCTGCTTCTGTAGCTAATTTCAGTGTGGTTTCCCTTGACGAAGAACAGATTGCTGCAAATCTGGTGAAGAATGGTCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACGTACATTGGTGGCGTCTCATGCCCATACATTTGCGGCAAGCATTTGGATCATGGGGTTCTTCTGGTGGGCTATGGTGCTGGTGCATATGCTCCTATTCGGCTTAAGGAAAAGCCCTACTGGATTATAAAGAATTCATGGGGGGAGAGCTGGGGAGAAAACGGATATTACAAGATCTGCAGAGGTCGCAATGTGTGTGGAGTGGACTCAATGGTCTCGACTGTAGCTGCTATACAAACTTCTAACCATTAA 1179 0.5182 MEEEFIKFPQRPKYPSPFLSHLSIPPMANPSLYFLSTLLLFSVAVATADRIGDEEDLLIRQVVPGAEDHLLNAEHHFSAFKTKFAKTYATQEEHDHRFRVFKSNLLRAKSHQKLDPSAVHGVTRFSDLTPSEFRSQFLGLKPLRLPSDAQKAPILPTNDLPTDFDWRDHGAVTGVKNQGSCGSCWSFSAVGALEGAHFLATGELVSLSEQQLVDCDHECDPEERGACDSGCNGGLMTTAFEYTLKAGGLMREEEYPYTGRDRGTCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAIQTSNH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00314 392 Pfam Cathepsin propeptide inhibitor domain (I29) 77 133 IPR013201 -
Cca07g00314 392 SUPERFAMILY Cysteine proteinases 74 385 IPR038765 -
Cca07g00314 392 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 349 368 IPR025661 -
Cca07g00314 392 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 325 335 IPR025660 -
Cca07g00314 392 CDD Peptidase_C1A 161 384 IPR039417 -
Cca07g00314 392 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 386 - -
Cca07g00314 392 PANTHER CYSTEINE PROTEASE RD19C-RELATED 49 386 - -
Cca07g00314 392 Gene3D Cysteine proteinases 55 385 - -
Cca07g00314 392 SMART Inhibitor_I29_2 77 133 IPR013201 -
Cca07g00314 392 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 178 189 IPR000169 -
Cca07g00314 392 Pfam Papain family cysteine protease 160 383 IPR000668 GO:0006508|GO:0008234
Cca07g00314 392 SMART pept_c1 160 385 IPR000668 GO:0006508|GO:0008234
Cca07g00314 392 PRINTS Papain cysteine protease (C1) family signature 178 193 IPR000668 GO:0006508|GO:0008234
Cca07g00314 392 PRINTS Papain cysteine protease (C1) family signature 327 337 IPR000668 GO:0006508|GO:0008234
Cca07g00314 392 PRINTS Papain cysteine protease (C1) family signature 349 355 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00314 Cca-Chr7 4168272 4170288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00314 K01373 - gmx:100779565 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00314 07 4168272 4170288 Cca07g00314 07 4168272 4170288 ECH