Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00292 ATGTCTGCATCCGAAGCGGAGAAGAAGGTCGAGGAGGAAGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGTCGTCGCAAGGGCGTCGTCGACGGTAACCTCGTCTCTCCCACGCGCCTCCGTCCTTTCCTCGGCGTTGACATTCGCTACGTTGCCGCCGGCTGCGTGTCTTGTCATTGCGTGGCATTGGACGTTGAAGGGCGTTGTTATACATGGGGACGTAATGAGAAGGGGCAACTGGGTCATGGAGATTCCATTCAGCGTGATAGACCAACTGTTGTGTCTGAACTTTCCAAATACAAAGTTGTCAAAGCTGGAGCAGGGAGAAGCCATACAGTCGTTGTTACCGAGGATGGAAATTCCCTAGCCTTTGGATGGAACAAACATGGACAACTAGGTTCGGGTTCTGTGAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTCTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCAATTGAAGGGGCTTCCATACTGACTGCAGGGCTTCCGCAATATGGGCAGCTTGGACATGGAACAGATAACGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGTCCTCGAGCAATTGCTGCTCTTGCTGGGGAAACTATTGTGAAAGTGGCATGCGGAACAAATCACACAGGTGGTTGTCATTCCTTGCTTGATCTTGGTTATATGACCTTATTTACTACTTTTCCTTATTATTTTTGTTTTGGATATTTAGTGGCGGTGGATAAGAATGGCTTCGTCTACACGTGGGGTTTTGGTGGCTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGCCGTGTTGATGTTTTTCAGAATAGAAATCTCTTGCCGCCTGATGCAGTTATTTCAGCTGGTTCTGTGAATTCTTCTTGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGCAAAATTAAGAACGCTGGTGATGACTGGATGTATCCTAAGCCTCTTATGGATTTAAGTGGTTGGAATTTAAGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGGCACGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGAAATACTCGAGGGTATGCATGTAATAAGTGTTGCGTGTGGCATGGGTCATTCGATGGTTATTGTTGATAGAACAAATGTTGCTGATAGGCTTGACCAGCTTGATGTATATGATGGCAAAGCTGTTGATGAAGGTAATGAGGCCATGAACACAACTCCAGTGCCTAAGCAAAAGGAAAAAGGAGCTGCGAAGAAGGGTGCAAAAGGAGCTGACAACTCAAAGAAGAGAAAAAAATCAAAAGATTCATCTGAGTCAGAGGAGGAAGAGGATGCTGAAGAAAGTGATGATAGTGAGGATCAAATTAATGGCAAGGCTGAGGTGAAAAGGTCGCGTAGTTCTGGTAAAGGCCGAGGTAAGGCATCCAAAAAGTCAGGTGCTAAGGAAACAAGCTCTGGCCGGGCACGGGGTGGTGCTGCAGCAAATAAAAACAGTTCTAAACCCCCTCAGGTGAAATCTGGCAAGAGAGGAAGACCCCTTCAAATCTTAAAGCATGGTCGTGGATACTACCCCATACAAATTATCCCGTAG 1737 0.4704 MSASEAEKKVEEEEVKGGELLFCGATCWDIIGRRKGVVDGNLVSPTRLRPFLGVDIRYVAAGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDSIQRDRPTVVSELSKYKVVKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAALAGETIVKVACGTNHTGGCHSLLDLGYMTLFTTFPYYFCFGYLVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNLLPPDAVISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVEILEGMHVISVACGMGHSMVIVDRTNVADRLDQLDVYDGKAVDEGNEAMNTTPVPKQKEKGAAKKGAKGADNSKKRKKSKDSSESEEEEDAEESDDSEDQINGKAEVKRSRSSGKGRGKASKKSGAKETSSGRARGGAAANKNSSKPPQVKSGKRGRPLQILKHGRGYYPIQIIP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00292 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 427 IPR000408 -
Cca07g00292 578 MobiDBLite consensus disorder prediction 539 553 - -
Cca07g00292 578 Gene3D - 261 453 IPR009091 -
Cca07g00292 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 113 123 IPR000408 -
Cca07g00292 578 Gene3D - 8 244 IPR009091 -
Cca07g00292 578 PANTHER PROTEIN RCC2 5 239 IPR028641 -
Cca07g00292 578 PANTHER PROTEIN RCC2 265 549 IPR028641 -
Cca07g00292 578 PRINTS Chromosome condensation regulator RCC1 signature 369 390 IPR000408 -
Cca07g00292 578 PRINTS Chromosome condensation regulator RCC1 signature 110 123 IPR000408 -
Cca07g00292 578 PRINTS Chromosome condensation regulator RCC1 signature 76 92 IPR000408 -
Cca07g00292 578 PRINTS Chromosome condensation regulator RCC1 signature 129 145 IPR000408 -
Cca07g00292 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 180 245 IPR000408 -
Cca07g00292 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 127 177 IPR000408 -
Cca07g00292 578 MobiDBLite consensus disorder prediction 461 487 - -
Cca07g00292 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 75 126 IPR000408 -
Cca07g00292 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 328 IPR000408 -
Cca07g00292 578 Pfam Regulator of chromosome condensation (RCC1) repeat 183 239 IPR000408 -
Cca07g00292 578 Pfam Regulator of chromosome condensation (RCC1) repeat 126 172 IPR000408 -
Cca07g00292 578 Pfam Regulator of chromosome condensation (RCC1) repeat 74 123 IPR000408 -
Cca07g00292 578 Pfam Regulator of chromosome condensation (RCC1) repeat 378 424 IPR000408 -
Cca07g00292 578 Pfam Regulator of chromosome condensation (RCC1) repeat 272 311 IPR000408 -
Cca07g00292 578 SUPERFAMILY RCC1/BLIP-II 17 427 IPR009091 -
Cca07g00292 578 MobiDBLite consensus disorder prediction 447 578 - -
Cca07g00292 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Cca07g00292 578 MobiDBLite consensus disorder prediction 501 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00292 Cca-Chr7 3850718 3862663 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00292 - - gmx:100819842 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00292 07 3850718 3862663 Cca07g00292 07 3850718 3862663 ECH