Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00279 ATGGAAACTCAACACCAACAACCCTCCATCAAGTCTAGGTTCAGACGCATCTGTGTTTACTGTGGTAGCAGCCCTGGCAAAAGCCCCAGTTACCAGCTCGCTGCTGTTCAACTCGGAAAACAACTGGTGGAGAGGAAGATTGACTTGGTTTATGGAGGAGGAAGCATAGGGTTAATGGGTCTAATCTCACAAGTTGTGTATGATGGTGGACGCCACGTGTTAGGGGTTATTCCAAAGACACTTAATGCGAGAGAGATCACTGGAGAGAGTGTTGGAGAAGTGAAGGCTGTATCAGGCATGCACCAACGTAAGGCCGAAATGGCCCGACAAGCCGATGCATTTATTGCACTGCCAGGTGGATATGGCACCCTTGAAGAACTATTGGAAATTATCACCTGGGCTCAGCTAGGTATCCATGATAAACCGGTGGGGTTGTTGAACGTGGATGGGTACTACAACTCGCTGTTGGCGTTCATGGACAAAGCTGTGGACGAAGGCTTCGTAACACCAGCTGCCCGTCACATTATTGTTTCTGCCCAAACTGCCCAAGACCTCATGTGCAAACTTGAGGAATATGTCCCCGAGCACTGTGGCGTGGCCCCCAAGCTAAGTTGGGAGATGGAGCAACAGTTAGTTAACACTGCAAAGTCAGATATTTCTCGTTGA 666 0.491 METQHQQPSIKSRFRRICVYCGSSPGKSPSYQLAAVQLGKQLVERKIDLVYGGGSIGLMGLISQVVYDGGRHVLGVIPKTLNAREITGESVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVSAQTAQDLMCKLEEYVPEHCGVAPKLSWEMEQQLVNTAKSDISR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00279 221 Gene3D - 4 191 - -
Cca07g00279 221 Pfam Possible lysine decarboxylase 59 188 IPR031100 -
Cca07g00279 221 SUPERFAMILY MCP/YpsA-like 13 192 - -
Cca07g00279 221 PANTHER LOG FAMILY PROTEIN YJL055W 7 217 - -
Cca07g00279 221 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 7 217 - -
Cca07g00279 221 TIGRFAM TIGR00730: TIGR00730 family protein 16 192 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00279 Cca-Chr7 3563171 3565611 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00279 K22522 - gmx:100782787 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00279 07 3563171 3565611 Cca07g00279 07 3563171 3565611 ECH