Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00238 ATGAGGGCTGAGATGAAGGATGGAACTCAAGTTGTGGTGCATGATAATGGTAACTCCGGGAAAGTCTCAATCTCCAAGTTCTCACACCTTCTTGCTTCCCAAGATCGTGATTTTCTTCTCTCTCCAACGGGCTCTCAGGTAAAAGTTAGCGATCTTGAAGGGAAAGTAGTGGGTCTCTTATTCGCTGCCAATTGGTACCCACCATGCCGTGGATTCACCCAAGTCTTAGTTGGAATCTACGAGGAGCTGAAAAGCAGTGTCCCTCAATTCGAGATAGTGTATGTGTCCTCTGATGAGGACTTGGATGCCTTTAACAGCTTCTATGGAAACATGCCGTGGCTTGCAATTCCGTTCTCTGATTTGGAAACAAAGAAAGCTTTGAGCAGAAAGTATGACGTGGAAGGCATTCCATGCTTGATTTTGTTGCAACCTGACTATGGTAAAGAGAACGATGCAACAGTTCGTGATGGGGTTGAACTTATTTACCGCTATGGTGTCCAAGCTTATCCATTCAGTATCGAGAGGTTGTTGCAGCTGCAACATGAAGACAAAGTGAAGCTTGATAACCAGACCCTCGTTAATTTACTAGGAAACCAACACAGAAACTATGTTTTGACTCACACTCACACGGGACTCAAACAGGTACCCGTGAGTTCCCTTGTGGGCAAAACCATTGGACTCTACTTCTCAGCGGAATGGTGCGTGCCATGCGCCAAGTTCACTCCCAAACTCATCTCCGTGTACGAGAAGATAAAGCACGAGCTAGCCGAAAAGGGAGAGGAAGACTTCGAGGTTGTGCTAATCTCCAGCGACCGTGACCAAGCATCCTTCGACTCCTACTATAGCACCATGCCCTGGCTAGCCTTACCCTTCGGTGACCCTGAGATCAAGAACCTGGTTAGGCACTTCAACGTGCAGGGGATTCCCTGGTTGGTCATCATAGGCCCTGATGGTAAAACAATAACCATTCACGGTAGGAGCTTGATAAACTTGTACCAAGAGAACGCGTACCCTTTCACCAGCGCCAAAGTGGAGGAGCTGGAGAAAAAGCTCGAGGAAGAGGCTAAGGGTCTTCCAACGTTGGTGTTTCACGAAGGGCACCGCCACAACCTTAATTTGGTGTCTGATGGGAACGGTGGGGGCCCATTTATTTGCTGCGTGTGTGATGAACAAGGCTCTAGCTGGGCCTATCAGTGTCTCCAATGTGGCTATGAAGTGCACCCCAAGTGCGTAAGAGCTGTGGAACGTGACACtaatagtaataataataataatGTGTTGGTGGACACCACTACTGGTTGTGCATAA 1308 0.4755 MRAEMKDGTQVVVHDNGNSGKVSISKFSHLLASQDRDFLLSPTGSQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLVGIYEELKSSVPQFEIVYVSSDEDLDAFNSFYGNMPWLAIPFSDLETKKALSRKYDVEGIPCLILLQPDYGKENDATVRDGVELIYRYGVQAYPFSIERLLQLQHEDKVKLDNQTLVNLLGNQHRNYVLTHTHTGLKQVPVSSLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGEEDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHFNVQGIPWLVIIGPDGKTITIHGRSLINLYQENAYPFTSAKVEELEKKLEEEAKGLPTLVFHEGHRHNLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRAVERDTNSNNNNNVLVDTTTGCA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00238 435 SUPERFAMILY Cysteine-rich domain 357 412 IPR046349 -
Cca07g00238 435 Pfam Thioredoxin-like 222 319 IPR012336 -
Cca07g00238 435 Pfam Thioredoxin-like 54 145 IPR012336 -
Cca07g00238 435 Pfam C1 domain 366 411 IPR004146 -
Cca07g00238 435 Gene3D Glutaredoxin 30 172 - -
Cca07g00238 435 Gene3D Glutaredoxin 202 341 - -
Cca07g00238 435 CDD TryX_like_TryX_NRX 213 339 IPR045870 GO:0004791
Cca07g00238 435 ProSiteProfiles Thioredoxin domain profile. 29 163 IPR013766 -
Cca07g00238 435 PANTHER THIOREDOXIN 24 410 - -
Cca07g00238 435 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 368 418 IPR002219 -
Cca07g00238 435 SUPERFAMILY Thioredoxin-like 203 323 IPR036249 -
Cca07g00238 435 ProSiteProfiles Thioredoxin domain profile. 194 356 IPR013766 -
Cca07g00238 435 SUPERFAMILY Thioredoxin-like 39 145 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00238 Cca-Chr7 3033911 3041162 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00238 K17609 - gmx:100815038 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00238 07 3033911 3041162 Cca07g00238 07 3033911 3041162 ECH