Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00237 ATGCTGTCGTTTCACTCTTGTGGATGTTGGCGCGTTTCAACATCCAGAGCATTCCAATTCCAATTTCAATTTCAAACCTCACCTTCTTCTTCACTCTTTCTCTCTGCTACGAGCAATACATTTCGTTCTGTCACCGCGAGCGCTGCTTCTGGTTCCGCCGGCGACTCGGACTACGACGGAGAGCGAAATTTGAACTTCTCTGGTGCGCGATTGGAGGAGACCGTCGATAGCAAAATCGGATCTGGAAAACTCAGACTCGATAATTGGATCTCTTCTCGCATCAACGGCATTAGTAGAGCGCGCGTGCAATCAAGTATCAAAGCGGGACTTGTTCATGTCAATGGCCGTGTCATTGATAAGGTTTCTTTCAATGTCAAAGCTGGAGATGAGATTAAGTGCACAATTGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAACATGTTCTTGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGCAACACATCTGGGACACTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAATTTTCTAAAGAGGAAGCTCTTTCTGATACAGAAGATTCCGATGAGGAGTTCAATAGCTATGACTCCCTTGCAAGTTCTTGTGAAGGGTTACATTCTAGATTGTCTATGGCATCGATTCGCCCAGGGATTGTGCACAGATTGGACAAAGGCACGAGTGGGTTACTTGTTGTTGCAAAGGATGAGCATTCACATATGAAATTGTCAGAGCAATTCAAGCAACGTACCATCAAGAGAGTCTATGTTAGTATTACTGCTGGGGTACCCGCTCCAGTTGCTGGCCGTGTTGAAGTTCCAGTTGGTCGTGATCTTAATAACCGTCTCCGTATGACTGCTGTAGCTGGACCAAATAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGCAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGTACTCATCAGATTCGCGCTCACGCTAAGTATTTGGGAGTTCCTCTATTGGGTGATGAGGTGTATGGAGGGACAAAAAACATGGTCTTGTCACTGCTACGGCCCCGAACTTCGACGAGTTTGCATAGCAAAATTATAAAAATGGTTTCAGGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCGTACAGGGGAGCAGGTACACTTTTCATGCGAACCGCCTGCAGATTTCGACGAGATTTTGAGCCAGCTTCGTAGAATTGGCAGTGAAAGGGTTTCTATCTCAAAACGTTCAAATTTATGA 1353 0.4538 MLSFHSCGCWRVSTSRAFQFQFQFQTSPSSSLFLSATSNTFRSVTASAASGSAGDSDYDGERNLNFSGARLEETVDSKIGSGKLRLDNWISSRINGISRARVQSSIKAGLVHVNGRVIDKVSFNVKAGDEIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDEEFNSYDSLASSCEGLHSRLSMASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSITAGVPAPVAGRVEVPVGRDLNNRLRMTAVAGPNNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKNMVLSLLRPRTSTSLHSKIIKMVSGLDRPCLHALTLGFQHPRTGEQVHFSCEPPADFDEILSQLRRIGSERVSISKRSNL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00237 450 Gene3D - 71 140 IPR036986 GO:0003723
Cca07g00237 450 Pfam RNA pseudouridylate synthase 158 353 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca07g00237 450 SMART s4_6 84 149 IPR002942 GO:0003723
Cca07g00237 450 SUPERFAMILY Pseudouridine synthase 144 435 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca07g00237 450 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Cca07g00237 450 CDD PseudoU_synth_RluA_like 159 408 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca07g00237 450 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Cca07g00237 450 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 82 436 - -
Cca07g00237 450 CDD S4 85 163 - -
Cca07g00237 450 Pfam S4 domain 85 131 IPR002942 GO:0003723
Cca07g00237 450 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 82 436 - -
Cca07g00237 450 ProSitePatterns Rlu family of pseudouridine synthase signature. 239 253 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca07g00237 450 Gene3D Pseudouridine synthase 141 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00237 Cca-Chr7 3025613 3030998 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00237 K06180 - gmx:100810383 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00237 07 3025613 3030998 Cca07g00237 07 3025613 3030998 ECH