Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00235 ATGGCCTTCATCAAATCAACCGCACGCTTGCGTCACTCCCTCTCACCCATCCTCCCTCGCACCTTCAAACCATACTCTTCTTCACCCCTAGAACTTTCCGAACCTCAACTTCACCACCACACTTCCCAAACCCCTAACCTATCCCCCGAAGAAACCGCCATAGCCGACAAATTCCACGCCGCAATCAAAGACCACCACCGCCGAAACCCTAACGCCCCTCCTCCCACTCCCACCCTCACCATCCCCGAACTCTCCCTCCATTTCTCCGCAATCTCCGCCGCCCACCCAATTTCTCCAGCCGTCGCCCGCCTCGTCATCGAGAAATGCGCCGCCCCCCGCCACGGCATCCCCTTCCTCCAGTCCCTGGCGTTCTTCAACTGGGCCACCGCGCTCCACGCCTTCCCCCCCTCGCCGGATCCCTACAACGAGATGCTCGACCTCGCCGGCAAGCTCCGACAGTTCGACCTCGCGTGGCACGTAATCGACCTCATGAAGGCTCGCGGCGTCCAAATCACCGTCCACACCTTCTCCGCCCTCGTCCGCCGCTACGTCAGAGCCGGATTGGCTGCGGAGGCGGGGCACGCGTTTAACCGTATGGACGACTACGGCTGCACCCCTGATAAGGTCGCGTTTTCAATTCTCATTAGTAGCTTGTGTAGGAAGAGAAGGGCGAACGAGGCACAATCGTTTTTTGATTCACTTAAGCATAGGTTTGAGCCTGATGTTGTAGTCTACACTAGCTTAGTTCATGGATGGTGCCGCGCTGGTAACATTTCTAAGGCTGAAGAGGTTTTTAGTGACATGAAGATGGCTGGAATCCAACCTAATGTTTATACTTATAGCATTGTCATTGATTCCTTGTGCCGGTGCGGGCAAATTACTCGCGCTCATGATGTTTTCTCCGAGATGATTGATGCAGGGTGTGCTCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGTAGGACTGAGAAGGTCTTGCAAGTTTACAATCAAATGAAGAGGCTTGGTTGTGCTGCTGATACAATTAGTTACAATTTCATAATTGAGAGTCATTGTAGGGATGAGAATCTTGAAGAGGCTGTGAAGGTTCTTAATTTGATGGTGAAGAAAGGGGTTGCACCTAATGCATCCACTTTCAATTTTGTTTTTGGATGCATTGCTAAGTTGCATGATGTGAATGGTGCGCATAGGATGTATGCTAGAATGAAGGAACTGAAGTGCCAGCCCAATACTTTGACTTATAATATATTGATGAGGATGTTTGCGGAGTCGAAATCTACTGATATGGTTCTGAAAATGAAGAAGGAGATGGATGAGAATCAGGTTGAACCTAATGTGAATACTTACCGAATTTTGATTTCGTTGTTTTGTGAAATGAAGCACTGGAACAATGCGTACAAGTTAACGAAGGAGATGGTTGAAGAAAAATGCCTAAGACCGAATTTATCAGTTTATGAAATGGTTCTGGAGCAGTTGAGAAAGGCTGGCCAGCTGAAAAAGCATGAAGAGTTGGTGGATAAGATGGTTGCCAGGGGATTTGTGACTCGCCCTTTGTAG 1575 0.4927 MAFIKSTARLRHSLSPILPRTFKPYSSSPLELSEPQLHHHTSQTPNLSPEETAIADKFHAAIKDHHRRNPNAPPPTPTLTIPELSLHFSAISAAHPISPAVARLVIEKCAAPRHGIPFLQSLAFFNWATALHAFPPSPDPYNEMLDLAGKLRQFDLAWHVIDLMKARGVQITVHTFSALVRRYVRAGLAAEAGHAFNRMDDYGCTPDKVAFSILISSLCRKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGNISKAEEVFSDMKMAGIQPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCAPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFIIESHCRDENLEEAVKVLNLMVKKGVAPNASTFNFVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESKSTDMVLKMKKEMDENQVEPNVNTYRILISLFCEMKHWNNAYKLTKEMVEEKCLRPNLSVYEMVLEQLRKAGQLKKHEELVDKMVARGFVTRPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Cca07g00235 524 SUPERFAMILY TPR-like 208 475 IPR011990 GO:0005515
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Cca07g00235 524 Gene3D Tetratricopeptide repeat domain 236 306 IPR011990 GO:0005515
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Cca07g00235 524 Pfam PPR repeat family 173 220 IPR002885 -
Cca07g00235 524 Pfam PPR repeat family 240 289 IPR002885 -
Cca07g00235 524 Pfam PPR repeat family 346 391 IPR002885 -
Cca07g00235 524 Pfam PPR repeat family 415 463 IPR002885 -
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 237 IPR002885 -
Cca07g00235 524 Gene3D Tetratricopeptide repeat domain 117 235 IPR011990 GO:0005515
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 141 172 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Cca07g00235 524 TIGRFAM PPR: pentatricopeptide repeat domain 454 486 IPR002885 -
Cca07g00235 524 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 9 523 - -
Cca07g00235 524 Gene3D Tetratricopeptide repeat domain 307 394 IPR011990 GO:0005515
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Cca07g00235 524 Pfam PPR repeat 313 343 IPR002885 -
Cca07g00235 524 Gene3D Tetratricopeptide repeat domain 395 523 IPR011990 GO:0005515
Cca07g00235 524 MobiDBLite consensus disorder prediction 28 48 - -
Cca07g00235 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Cca07g00235 524 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00235 Cca-Chr7 3002043 3004450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00235 128 518 Glycosyltransferase AT1G05670 27.750 3.08e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00235 - - gmx:100800850 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00235 07 3002043 3004450 Cca07g00235 07 3002043 3004450 ECH