Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00228 ATGCCTACACTAGTTACTGGCGCAGAACCCTTGAGCCTGAAGCCCATTTTCGGTGCCTCAGGCGTTAAGGGCAAGCGAGTCACTGCGTTGTCCGCAGAAGAAAATGGCCTCAATGATTTCATTCAAACTATCATTGCGGACAAACCAGACATGGACTCGCCATTTAGCGTCCTTGATTTGGGGGTCATTATGGGCCTCATGGACAAATGGGCCACCAAGCTCCCCACGGTCCAGCCCTTTTACGCTGTCAAGTGCAACCCAAACCTGTCCTTGATCGGCGCGCTCGCGGCTCTCGGCTCCAGCTTCGACTGCGCCAGCCGAGCCGAGATCGACTCCGTCTTGTCCCTCGGAGTCTCACCCGACAGAATCATCTTCGCTAACCCATGCAAACCGGAGTCCCACATAAGATACGCTGCCACTGTAGGCGTCAACGTTACAACCTTTGACTCCAAAGACGAGGTCGAAAAGATCCGCAAATGCCACCCCACGTGCGAGTTGCTCCTACGCATCAAGCCGCCGCAAGACAGCGGCGCGCGCTCCAGCTTGGGCCTCAAATACGGCGCGCTGCTCGAGGAAGTCCCGGAGCTTCTCCAAGCGGCTCAAGCCGCTGGGCTGAGGAGCGTCTTCGACGAGGCTTCGCGGCTCGGCTTGCCAAGAATGAGCGTTTTGGACATTGGCGGCGGCTTCACTTGTGGCGCGCTTTTCGACGCGGCGGCTTTGAAAATAAACGCGGCGATTGAAGCCAGCTTCGGGAGCGAAGAGGGGCTGGTGGTTATTGGCGAGCCGGGGCGTTACTTCGCGGAAACGGCTTTCACGTTGGCGACGAAAGTTATTGGGAAGCGCGTTAGGGGTGAGATGAGGGAGTATTGGATTGACGACGGGATCTACGGAACACTTAATAACATTGTGTTTGATTACGCTACTGTCACGTGCACGCCACTGGCGTGCGCCTCGAGGCCTGAGAACCCTAGATGCAGGGATTCGAAGACGTATCCTTCCACTGTGTTTGGGCCAACTTGCGATTCTATTGATACGGTTCTGAGGGATTACCAGCTACCGGAGCTGCAAGTGAACGATTGGCTTGTCTTCCCCAACATGGGGGCTTATACGACGTCGTCAGGGACCAACTTCAACGGGTTTAGCTCGTCAGCCAAGTCTACGTTCCTGGCATATTCGAGCCCGATCGCACGGGAGCATGCCATGTTCTAA 1209 0.5608 MPTLVTGAEPLSLKPIFGASGVKGKRVTALSAEENGLNDFIQTIIADKPDMDSPFSVLDLGVIMGLMDKWATKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCASRAEIDSVLSLGVSPDRIIFANPCKPESHIRYAATVGVNVTTFDSKDEVEKIRKCHPTCELLLRIKPPQDSGARSSLGLKYGALLEEVPELLQAAQAAGLRSVFDEASRLGLPRMSVLDIGGGFTCGALFDAAALKINAAIEASFGSEEGLVVIGEPGRYFAETAFTLATKVIGKRVRGEMREYWIDDGIYGTLNNIVFDYATVTCTPLACASRPENPRCRDSKTYPSTVFGPTCDSIDTVLRDYQLPELQVNDWLVFPNMGAYTTSSGTNFNGFSSSAKSTFLAYSSPIAREHAMF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00228 402 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 207 395 IPR002433 GO:0006596
Cca07g00228 402 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 19 207 IPR002433 GO:0006596
Cca07g00228 402 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 213 230 IPR022657 -
Cca07g00228 402 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 81 99 IPR000183 GO:0003824
Cca07g00228 402 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 367 380 IPR000183 GO:0003824
Cca07g00228 402 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 101 113 IPR000183 GO:0003824
Cca07g00228 402 SUPERFAMILY Alanine racemase C-terminal domain-like 253 382 IPR009006 GO:0003824
Cca07g00228 402 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 64 205 IPR022644 GO:0003824
Cca07g00228 402 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 206 267 IPR022644 GO:0003824
Cca07g00228 402 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 268 367 IPR022643 GO:0003824
Cca07g00228 402 Gene3D Alanine racemase 206 264 IPR029066 -
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 79 106 IPR002433 GO:0006596
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 354 367 IPR002433 GO:0006596
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 53 77 IPR002433 GO:0006596
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 123 147 IPR002433 GO:0006596
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 334 344 IPR002433 GO:0006596
Cca07g00228 402 PRINTS Ornithine decarboxylase signature 153 175 IPR002433 GO:0006596
Cca07g00228 402 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 265 396 IPR009006 GO:0003824
Cca07g00228 402 Gene3D Alanine racemase 61 205 IPR029066 -
Cca07g00228 402 CDD PLPDE_III_ODC 52 384 - -
Cca07g00228 402 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 81 99 IPR022653 -
Cca07g00228 402 PANTHER ORNITHINE DECARBOXYLASE-LIKE 207 395 - -
Cca07g00228 402 PANTHER ORNITHINE DECARBOXYLASE-LIKE 19 207 - -
Cca07g00228 402 SUPERFAMILY PLP-binding barrel 52 270 IPR029066 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00228 K01581 - gmx:547682 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00228 07 2928150 2929738 Cca07g00228 07 2928150 2929738 ECH