Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00197 GCAGACTGGTTTGCTTTTATTGGTAGAAAAGCAGCCCCTCATGGTCTTGGTTCACCATATGCAATTACATTCCGGCCAGATGCAACCGGGTCATCGGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGTTGTTCTTGTGGTGACTGTCCTTCGTCTTCAGTTTGTTCTAATTCAGCTTCACCTACCACTGATAAGAAGGATTCCTGCTCCGTGAGAGTTGGGACTTTAATGGTGAAGTGTGTTGACTTGATTTTAGCAGTCTTATACATTATACTTATTTGTGTTTTCTTGGGTTGGGGATTGTATCATCGAGTAAGGGAAAGAAAACCAACATACAGAACAAAATCAGTGTCTAATGTGATTAATGATGGTGCCCTGTATTCTCATAATAGGGAGAAGGATGAAAACCTCCCGATGCAGATTCATATGATGCAAGATGTTCCACAAGACAGAAATGGTGTCCGGCTCTCTGCTGTGCAAGGATATATGACAAATTTTTACAGGAAATATGGATCATATGTAGCTAGACATCCAATTATGGTGTTGCTTTCATCTTTGGCTGTAGTTCTTCTCCTCTGTCTAGGTCTAATTCGATTCAAGGTGGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTTTTTGACAGTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATTCTGGCAACGGTTCCAGATCATGTGAATAGTACATCACCAAGAATTGTGTCGGAGGACAACATTAGGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTCAAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGATCCCAAAAATTTTGATGATTATGGAGGAGTTGACCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACCAATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGTACTGTATTAGGAGGTTTTTCTGGCAATGATTATTCTGGGGCATCTGCGTTTATTGTAACATATCCGGTAAATAATGCTATTAATGAAGAAGGTAATGAAACCAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTATTACCGATGGTACAATCAAGAAATTTGACACTAGCTTTTTCATCTGAAAGCTCTGTAGAGGAAGAGTTGAAAAGAGAAAGTACTGCAGATGCTATCACTATATTGGTTAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACACTCCACCCGTCATCTTTCTATATTTCATCCAAGGTGTTGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGATTTTTTAGTGTGCTCGGTGTAAAATCTACTCTGATCATCATGGAAGTCATTCCCTTTCTTGTCCTAGCTGTTGGGGTCGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAACAGCCAGATTTGTCCTTTGAAGAACGAATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTAGCCAGTGTGTCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTTCTCCATGTTTGCTGCATTAGCTGTTCTTTTGGACTTCCTCCTGCAAGTTACTGCTTTTGTAGCTCTCATAGTTCTTGACTCTTTGCGAGCAGAGGATAAGAGGGTTGATTGTTTTCCATGCATAAAAGTGCGTGCAAACCCTGATATAGGAATTGGACAAAGAAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGCGTAAAAATAGTTGTCATAGCTATTTTTGTGGGATTTGCATTGGCCAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAGCAAGAAATTGTTCTTCCTCGAGATTCTTATCTTCAGGGTTATTTCAATAATGTTTCAGAATATCTCAGAATTGGACCACCTTTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCAACACAAACGAATCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTAGTACCTGACACGAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGAAAGTTCTTGTGTTTCGGTGGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCTGATCTCCATGATGATCGACCATCTACAGCACAATTTAGGGAGAAACTGCCATGGTTTCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACCAGCAGTGTTGAACTGAAAGGCTACAACAATGGCATTATTCAAGCATCGTCATTCCGTACATATCATACCCCTCTCAACAAGCAGATTGACTATGTTAATTCTATGAGGGCCGCACGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTGAAGATTGAGATCTTTCCGTATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAAACTGCACTGGTCAACCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTCATCACTAGCAGTTTATGGAGTTCATCAATCATTTTATTGGTGTTGGCGATGATTGTCGTTGATCTTATGGGTGTGATGGCCATTTTGAATATCCAGTTGAATGCTCTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCTAGTGGAGACAGAGATCAACGTGCTAAGGAGGCTTTGGGCACAATGGGTGCTTCAGTGTTCAGTGGTATAACACTCACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTGTTTGTGATTTATTACTTTCGAATGTACTTGTCGTTGGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCAATTATTGAGAAGGAGGAAGACCGTTCATCAACCTCTTCATAG 3279 0.4081 ADWFAFIGRKAAPHGLGSPYAITFRPDATGSSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSNSASPTTDKKDSCSVRVGTLMVKCVDLILAVLYIILICVFLGWGLYHRVRERKPTYRTKSVSNVINDGALYSHNREKDENLPMQIHMMQDVPQDRNGVRLSAVQGYMTNFYRKYGSYVARHPIMVLLSSLAVVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATVPDHVNSTSPRIVSEDNIRFLFEIQKKVDAIRANYSGLMVSLKDICMKPLDKDCATQSVLQYFKMDPKNFDDYGGVDHLNYCFEHYSSADQCMSAFKAPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAINEEGNETRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSSFYISSKVLLGLSGVILVMLSVLGSVGFFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQPDLSFEERISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVRANPDIGIGQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVGFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESTQTNQLCSISRCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGESSCVSVGTCKDCTTCFRHSDLHDDRPSTAQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYNNGIIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGAVFIVCLVITSSLWSSSIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSIIEKEEDRSSTSS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00197 1092 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 2 1091 - -
Cca07g00197 1092 PANTHER PATCHED FAMILY PROTEIN 2 1091 - -
Cca07g00197 1092 Gene3D Multidrug efflux transporter AcrB transmembrane domain 391 604 - -
Cca07g00197 1092 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 409 595 - -
Cca07g00197 1092 TIGRFAM 2A060601: Niemann-Pick C type protein family 2 1073 IPR004765 GO:0005319|GO:0016021
Cca07g00197 1092 Pfam Patched family 226 708 IPR003392 GO:0016021
Cca07g00197 1092 Pfam Patched family 855 1072 IPR003392 GO:0016021
Cca07g00197 1092 ProSiteProfiles Sterol-sensing domain (SSD) profile. 432 595 IPR000731 -
Cca07g00197 1092 Gene3D Multidrug efflux transporter AcrB transmembrane domain 880 1077 - -
Cca07g00197 1092 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 882 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00197 Cca-Chr7 2520013 2534128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00197 2 1092 Miscellaneous Gene Families AT1G42470 73.126 0.0 1601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00197 K12385 - gmx:100813262 2033.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00197 07 2520013 2534128 Cca07g00197 07 2520013 2534128 ECH