Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00193 ATGGGCGAGGTATCTGAAACCATGACGAAGAGGAAGAAGAAGGGACGCCCCTCCCTTTTGGATCTTCAAAAGCGATCTCTCAGAAAGCAACAGCGACAAAACCCCAATTCCCAACCCAACACCAACGTcgaccacgaccacgaccacgacgacgacgacgacGAGCGCAAGGAGAAGAAGCACAAGCTCTTGGTCGGTCTCAATTCCCATCTCCACCACCCAACATTACTGCCCAATTTCCACCCCTTCAATTCCGATCCCAAGAGGCGCAGAATTGACCCTCTCCACCAAACGGATGAGAAGGTTCCGAAAGCGACTGACAGTAAACATGGTTCGCAGGGTGAGTCCGGTCCCACTACACCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGGCTTCAAAAAAAGGACACACATGGGGTGTTTTCTGAGCCCGTGGATCCAGAAGAGCTTCCTGATTATCACGACATCATTAAACAACCGATGGATTTTGGAACTGTGAGGAAGAAATTGGATGGGGGGCTATATGCGGACTTAGAACAATTTGAGAAAGATGTGTTCTTGATATGCTCGAATGCAATGCAATATAATTCAGCAGATACCATTTACCACCGACAGGCCCGAGCCATGCAAGAGATAGCAAGGAAGGACTTTGAGAATCTGAGACAAGATAGTGATGATAGTGAACCACAGCCCAAAATTGTGCAGAGAGGAAGGCCACCAGGCAAGCAAACAAGAAAGTCACTAGGTATGCCTCCTTCTGAGCGAGTTGGTCCCGAGTCTTCTTCTGATGCAACTCTTGCTTCTGGAGGGGATATTGCTAGTGGCTCCAATGGTTATAATCTAAGGAAAGTGCCAAGCAAATTTCAGCCTACAGATTCATCTGCCAGGGTCTACAACAGCACTTTTAATAGTGGAGGGTATGCTGGCTGGTCCGATTGGGAGAATGAATTTCCAGCTTCTGTTGTAAAAGCTGTATTGAGATATGGAAAGAAGCAGTTTGTTGTTGATGAGACCAGGCGTGATACTTATAAAAATCCCATGACTTCAGGAAATGAACGACCGGTGCTGACCACAGTTGAAGATGAATTCAAGCAACTTCTTGCAGTAGGTGTACACATGAAGCATAGCTATGCAAGAAGTCTGGCTAATTTTGCTGCAGATCTTGGTCCTGTTGTCTGGAAGATTGCTGCAAGTAAAATCAGCAGTGTTTTGCCGACAGGACATGAATTTGGTCCTGGATGGGTTAGTGAAGATGACGTGTCACAGATGCAACACTTGCCAGTTTGTGATGAGGGTAGAACTTCAGACCCTCCTGTACCAGAGGATTATAGAAGTAGATTTTCCTCACCTTCTGGATCGTTCCCCCTTGCAAATAGATCATCATGCTTGCAAAGTGGAGACATGGTTATGAATAACAACCAAAATGAGTTGAATCCAGTAATCAGCATTGGTGATGGGTCTGAAACTACGACACCTGTGAGGATTCAACAGGAATCCATGGCACACTCTGATGATTTCAGTTCACATGATCGGTTAGGTTCTAACTTTTCATCCCAAATGAAGATGGTAAGACTTGCTGACCTAACTGGGTCTCCGAGTACTGGGGGGGTTGTTCCTCAAATGTTTGACATGGATCCCATAGGCAGCCGCATTGCGCATACAAATATGAATTCATCTTTTAAGGGCCAACACTTCAGCAAATCAAGTCAACTAGATTCTGGTAATTTATTGGCTCGGGAATCTGGATTTGAGCCACGAAGTTGGGCTCAAGGGCCTGCTGGAAAATCATCTTGGCAGGGATTGGATGTTCCCACTAAACAGAATTCTTTTGCACTTGCTAATGACCTCAATGGAAAGATTGGAACAACAAATTCACCTAGTTCCAACGTGGAGGCTGGTTCCCAGTTGCAGCCCAATTTGGCATTACAGCTATGA 1944 0.4475 MGEVSETMTKRKKKGRPSLLDLQKRSLRKQQRQNPNSQPNTNVDHDHDHDDDDDERKEKKHKLLVGLNSHLHHPTLLPNFHPFNSDPKRRRIDPLHQTDEKVPKATDSKHGSQGESGPTTPLPDKKLLLFILDRLQKKDTHGVFSEPVDPEELPDYHDIIKQPMDFGTVRKKLDGGLYADLEQFEKDVFLICSNAMQYNSADTIYHRQARAMQEIARKDFENLRQDSDDSEPQPKIVQRGRPPGKQTRKSLGMPPSERVGPESSSDATLASGGDIASGSNGYNLRKVPSKFQPTDSSARVYNSTFNSGGYAGWSDWENEFPASVVKAVLRYGKKQFVVDETRRDTYKNPMTSGNERPVLTTVEDEFKQLLAVGVHMKHSYARSLANFAADLGPVVWKIAASKISSVLPTGHEFGPGWVSEDDVSQMQHLPVCDEGRTSDPPVPEDYRSRFSSPSGSFPLANRSSCLQSGDMVMNNNQNELNPVISIGDGSETTTPVRIQQESMAHSDDFSSHDRLGSNFSSQMKMVRLADLTGSPSTGGVVPQMFDMDPIGSRIAHTNMNSSFKGQHFSKSSQLDSGNLLARESGFEPRSWAQGPAGKSSWQGLDVPTKQNSFALANDLNGKIGTTNSPSSNVEAGSQLQPNLALQL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00193 647 SUPERFAMILY Bromodomain 106 228 IPR036427 GO:0005515
Cca07g00193 647 PRINTS Bromodomain signature 139 152 IPR001487 GO:0005515
Cca07g00193 647 PRINTS Bromodomain signature 153 169 IPR001487 GO:0005515
Cca07g00193 647 PRINTS Bromodomain signature 169 187 IPR001487 GO:0005515
Cca07g00193 647 PRINTS Bromodomain signature 187 206 IPR001487 GO:0005515
Cca07g00193 647 Gene3D - 122 239 IPR036427 GO:0005515
Cca07g00193 647 MobiDBLite consensus disorder prediction 84 108 - -
Cca07g00193 647 MobiDBLite consensus disorder prediction 42 65 - -
Cca07g00193 647 ProSitePatterns Bromodomain signature. 141 198 IPR018359 -
Cca07g00193 647 MobiDBLite consensus disorder prediction 1 28 - -
Cca07g00193 647 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 98 469 - -
Cca07g00193 647 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 7 68 - -
Cca07g00193 647 MobiDBLite consensus disorder prediction 261 296 - -
Cca07g00193 647 MobiDBLite consensus disorder prediction 223 296 - -
Cca07g00193 647 Pfam Bromodomain 131 210 IPR001487 GO:0005515
Cca07g00193 647 SMART bromo_6 117 225 IPR001487 GO:0005515
Cca07g00193 647 PANTHER BROMODOMAIN CONTAINING PROTEIN 98 469 - -
Cca07g00193 647 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 68 - -
Cca07g00193 647 MobiDBLite consensus disorder prediction 1 123 - -
Cca07g00193 647 CDD Bromodomain 124 220 - -
Cca07g00193 647 MobiDBLite consensus disorder prediction 433 455 - -
Cca07g00193 647 ProSiteProfiles Bromodomain profile. 136 206 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00193 Cca-Chr7 2467123 2471604 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00193 K22184 - gmx:100811115 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00193 07 2467123 2471604 Cca07g00193 07 2467123 2471604 ECH