Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00188 ATGTTTTCTGAAAGATTGGGGGCAGACCAATCTCATTGTCAAGATTTGCAGAGTTTGAGTGTGTCGAAGAGACTTGTGAGGAGTGTTAGCCAGAAGTTGAGGAAGAAGAATATCAGGAATGTGGGGGAGGAAGATGATGATGATGTAAATGGGGTTTCTTTAAGATGCTTAAATCTGTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACTAGTGATGATTTTGGTGATTCAAGCAGTAGAAGGAGGTCTAGTGCCAGTGACGAAGGGAAGGGATATAAACCGATTTGTGGTCCGGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTGAAGGACAGGTTTTGGAGGAGATACTACCGAAAGAATTCCGAGCTTGAAGAATTGTTAACGAACAATAGAATGCATATCTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTCCCGTTGACAAGTCTCATGAATGCCCGACTTGTGTGCAAAAAGTGGAGGTCCTTGACTACAACGCCTAGATTCCTCCAAATGAGGAGGGATGGTTCATATCAAAATCCATGGTTGTTTCTGTTCGGTGCTGTTAAAGATGGCTTTTGTTCTGGTGAGATACATGTGCTGGATGTGTCTATGAATCAATGGCACAGGATAGATGCCGATTTTCTCAGAGGAAGGTTCTTGTTCTCCGTTGCTGGTATACTAGATGATATCTTCGTTGTTGGAGGATGTTCTAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCGTTCAAGACACACAAAGGGGTGCTTGTATTTAGCCCCTTGACTAAATCTTGGCGTAAAATGCCGTCCATGAAATATGCCAGATCAAATCCTATATTAGGAGTCTCTGAGGTCAGTTTGGATTTTCCAGCTTGTCAAAGCCATCAAAGTCGGCAGGATAGACGTTTTCCAAGATCAAGGATTGGTGGGGTTTCAGATGTCTATGAGGATCCTCATAAGCTTTCAATGAGACGTCATTGCAGATCTGCTTTTAATGAGACCGAAGCGCCATCTTTGCCCAGTCGAAAGGCATACAAATTCCTTAGACAAAAAAGTGATCATTCAGGCTCAAAGGGCAGTAAAAGATTCTTGTTGATAGCTGTAGGAGGTCTGGGATCTTGGGATGAGCCTCTGGACTCTGGAGAAATATATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTACCTTTTGATTTTGGGGTTGCTCGTTCTGGAACTGTTTGTGGCAGGATGTTTTATGTTTTTTCTGAAACGGATACGCTTGCGGCATATGACATAGAACGGGGTTTTTGGGTTGCAATTCAAACCACTCCAATCCCACCTCGGGTTCATGAATACTACCCCAAGCTTGTATCTTCTAATGGCCGTCTTTTCTTGCTCTCAGTGTCCTGGTGTGAAGGGGATGGTCAAATTGGGCGACGAAACAAGGCCGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGACTGAAGCCTCAGTGCATCCTGATGCCCCAATGGACTGGAATGCTGTTTTTGTGGCAGACAATAACCTGGTTTTCGGGGTGGAGATGTTCAAAATATTTGGTCGGGTGTTGGGTTTTTTCACTGTATGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGAATCATGCGACTCATGAGCTGGATGGTTCTTCGTGCTTGACCAAATCTGTGGCAGTGCTACACCTTTGA 1743 0.4383 MFSERLGADQSHCQDLQSLSVSKRLVRSVSQKLRKKNIRNVGEEDDDDVNGVSLRCLNLYGRGGGCKVGADTSDDFGDSSSRRRSSASDEGKGYKPICGPEETAVDCFSYGVKDRFWRRYYRKNSELEELLTNNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLQMRRDGSYQNPWLFLFGAVKDGFCSGEIHVLDVSMNQWHRIDADFLRGRFLFSVAGILDDIFVVGGCSSLTNFGKVDRSSFKTHKGVLVFSPLTKSWRKMPSMKYARSNPILGVSEVSLDFPACQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCRSAFNETEAPSLPSRKAYKFLRQKSDHSGSKGSKRFLLIAVGGLGSWDEPLDSGEIYDSVSNKWTEIPRLPFDFGVARSGTVCGRMFYVFSETDTLAAYDIERGFWVAIQTTPIPPRVHEYYPKLVSSNGRLFLLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEASVHPDAPMDWNAVFVADNNLVFGVEMFKIFGRVLGFFTVCDVSDMANWNHISRNHATHELDGSSCLTKSVAVLHL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00188 580 ProSiteProfiles F-box domain profile. 134 180 IPR001810 GO:0005515
Cca07g00188 580 SUPERFAMILY Kelch motif 187 528 IPR015915 GO:0005515
Cca07g00188 580 MobiDBLite consensus disorder prediction 74 94 - -
Cca07g00188 580 PANTHER OS09G0555300 PROTEIN 1 580 - -
Cca07g00188 580 MobiDBLite consensus disorder prediction 76 90 - -
Cca07g00188 580 Pfam F-box domain 140 176 IPR001810 GO:0005515
Cca07g00188 580 Pfam Kelch motif 374 407 IPR006652 GO:0005515
Cca07g00188 580 Pfam Kelch motif 226 280 IPR006652 GO:0005515
Cca07g00188 580 SMART fbox_2 140 180 IPR001810 GO:0005515
Cca07g00188 580 Gene3D - 341 564 IPR015915 GO:0005515
Cca07g00188 580 SMART kelc_smart 237 294 IPR006652 GO:0005515
Cca07g00188 580 SMART kelc_smart 373 417 IPR006652 GO:0005515
Cca07g00188 580 Gene3D - 152 296 IPR015915 GO:0005515
Cca07g00188 580 PANTHER OS09G0555300 PROTEIN 1 580 - -
Cca07g00188 580 SUPERFAMILY F-box domain 140 202 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00188 - - ccaj:109802378 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00188 07 2365158 2368257 Cca07g00188 07 2365158 2368257 ECH