Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00184 ATGGCCACCCATGCAGCTCTAGCTTCTACAAGGATCCCTACGAACACCAGGCTTCCATCCAAGGCCTCTCACTCTTTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTCCCAACCCAATGTGCCACAAAGAGACTTGAGGTGACAGAATTCTCTGGACTAAGATCCACTTCATGTGTCACCTATGCTAACAATGCCAGAGAATCTTCCTTTTTTGATGTCGTAGCTTCCCAACTCACTCCCAAGACCAATGGATCAACTCCTGTGAGGGGAGAGACAGTGGCCAAGTTGAAGGTGGCAATCAACGGTTTTGGACGCATTGGTAGAAACTTCCTTCGCTGCTGGCACGGCCGAAAAGACTCACCCCTTGAGGTCATTGTTGTCAACGATAGTGGTGGTGTCAAGAATGCTTCGCACCTGTTGAAATATGATTCTATGCTGGGAACCTTTAAGGCAGATGTGAAAGTACTAGACAATGAAACCATCACCGTTGATGGTAAGCCCATCAAGGTTGTTTCCAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGTACAGGAGTGTTTGTGGATGGACCTGGTGCTGGCAAACACATCCAAGCAGGTGCCAAGAAAGTTATTATCACTGCTCCTGCAAAGGGTGCTGATATTCCAACTTATGTTGTCGGAGTAAATGAACAGGACTACACTCATGAGATCTCCAACATTATAAGCAACGCTTCCTGCACTACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGACGAGCCAGGGCTGCAGCACTGAACATTGTCCCAACCAGCACTGGAGCAGCCAAGGCCGTGTCTCTGGTGCTGCCAAAGCTGAAGGGAAAGCTGAATGGCATTGCTCTCCGTGTGCCTACACCCAATGTTTCAGTCGTTGACCTTGTGGTCAATGTTGAGAAGAAGGGTCTCACTGCTGAAGATGTGAATGGAGCATTCAGAAAGGCTTCAGAGGGGCCACTGAAAGGTGTATTGGACGTGTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCTCTGATGTTTCTTCTACTATTGACTCATCCTTGACCATGGTCATGGGAGATGATATGGTTAAGGTTGTTGCTTGGTATGACAATGAGTGGGGATACAGCCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAGCAAGTGGCCAGGGGCACCTAAAGCAGGGAGTGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTGCTGATGAGGAATGCAAAGTTTATGAATAG 1461 0.4511 MATHAALASTRIPTNTRLPSKASHSFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFPTQCATKRLEVTEFSGLRSTSCVTYANNARESSFFDVVASQLTPKTNGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKVLDNETITVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYTHEISNIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPKLKGKLNGIALRVPTPNVSVVDLVVNVEKKGLTAEDVNGAFRKASEGPLKGVLDVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAPKAGSGDPLEDFCQTNPADEECKVYE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00184 486 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 122 448 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cca07g00184 486 MobiDBLite consensus disorder prediction 1 30 - -
Cca07g00184 486 Pfam CP12 domain 465 486 - -
Cca07g00184 486 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 57 486 IPR020831 GO:0016620
Cca07g00184 486 Gene3D Dihydrodipicolinate Reductase; domain 2 273 438 - -
Cca07g00184 486 Gene3D - 122 450 - -
Cca07g00184 486 MobiDBLite consensus disorder prediction 8 22 - -
Cca07g00184 486 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 290 IPR036291 -
Cca07g00184 486 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 57 486 - -
Cca07g00184 486 SMART gp_dh_n_7 121 274 IPR020828 GO:0051287
Cca07g00184 486 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 279 436 IPR020829 GO:0016620
Cca07g00184 486 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 272 279 IPR020830 GO:0016620
Cca07g00184 486 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 274 437 - -
Cca07g00184 486 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 122 223 IPR020828 GO:0051287
Cca07g00184 486 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 268 286 IPR020831 GO:0016620
Cca07g00184 486 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 243 IPR020831 GO:0016620
Cca07g00184 486 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 392 407 IPR020831 GO:0016620
Cca07g00184 486 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 295 311 IPR020831 GO:0016620
Cca07g00184 486 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 351 368 IPR020831 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00184 Cca-Chr7 2310119 2313721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00184 K05298 - gmx:100806482 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00184 07 2310119 2313721 Cca07g00184 07 2310119 2313721 ECH