Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00178 ATGAGGTCCAttccgtttctgtttctgtttctgtttccgattctttttgcatttccctttctgtCCTCGCCCGTGCTCTCTGCTTCGGATCTGATCCTCGCCAAGGTTGACCGTCGTATTGATCTTACATCACAAATTGTGCGCGTCACTACTTCACTAAAGGTGGAGAATACGGGATCTGATGTTGTGTCTGAGATTTTGCTGTCCTTTCCTGAAAGCCAGGCAAATCACTTGGCATACTTGAAAGCAACACTTAGCGAAGGGAAGGGGAAAGTAAAACCATCCCCTGGTGTTGGTTTACCTGTGGAAGTTGTCCACCCTAAAGATTTCCCTCCTGCCTTGACAATTTATTCCGTATCTTTACCTAAGGGGCTTGGGAAGGGAGATAGTTTGACATTGGATGTCTTGGCTGTTTTAACCCACACATTGCAACCATTTCCAGAGAAAATCAACCAGGGTGACATCCAGCTTCTACTGTTTCAAGAGAGTGCACAATATCTCTCTCCATATGCAGTTAAGGTCCAATCACTCACTGTTAAATTGCCTGAGGCAAGAATAGAGTCCTATACAAAACTAGAAAATGCAAAACTTCAGGGATCTGAATTAAAATATGGTCCATATGAGAATCTTCCTCCATTTTCATACTTGCCAATAGTTATTCATTTTGAGAACAACCAACCCTTTGCTGTTGCTAAAGAGTTGGTGCGAGAGATCGAAATTTCCCATTGGGGCAATGTACAGATCACAGAGCATTACGATATTATTCATGCTGGTGCTCAGAGTAAAGGAGAATTTTCTAGGCTTGACTATCAGACCAGGCCATATTTAAGAGGTGCATCAGCCTTTAGGCGCCTTGTTGCCAAGCTGCCTCCAAGAGCTCATTCTGTGTACTACAGGGATGAAATTGGCAACATTTCTACTTCTAGTTTATGGGGTGACTCAAAAAAGACAGAACTGGAGATTGAACCTAGGTACCCTATGTTTGGTGGCTGGAAAACGGCCTTTACCATTGGATATGGCTTGCCACTTCGGGACTACTTATTTGGATCAGAAGGAAAGCGCTTCCTTAATATCACTTTTGGTGCCCCTATTAATCAGTTGGTGATTGACACTCTCTTTGTGAAGGTTGTTTTGCCTGAGGGTTCTAAAGACATTTCAGTATCTGCTCCATTCCCTGTGAAACAATGGCAAGAGACAAAGCTTTCCCACTTGGATATTGGTGGTAGGCCTGTTGTTGTGCTGGAGAAAAACAATGTTGTGCCTGAGCATAATGAACATTTTCAGGTCTACTATAAGTTCAACAGTCTCTCTATGCTCAGGGAGCCTTTAATGTTGATTTCTGGGTTTTTCTTTCTGTTTGTTGCTTGCATTGTCTACACACATGCAGACATATCAATTTCCAAATCTTCTGCATCTTATTTAGCAAAGCTCCAGTGGGACGAGGTGCAAGCAACTATTCAGCAGGTCCATGGTATCATTAGCCGATGCTTAACAGCACATAACAAGCTAGAAACATCATTGCACGATCTTTCTAGGACAGGAGATATTCAAGGATGTAAAGCAACTAGAAAATCAGTTGATAGCTCGTTGAAAGAGCTCTCTAAAGAGTTGAAGTTACCATTGGCATTCTTGCAATCTTCTCCGCAAGCTGCTCAAATTTTACCCAAGGTGGAGGAACTTGTTGCTAAGGAAAGAGAGTTGCAGGATAAACTTTTAGCGAAACACACTACAGTTGTAGACTGCTATGAGAAGAAGTTAGGAGGAAGGGAAATTGAGAATCGGATTGCTCCACAACAGCAGAAGATTAATTCTTTGAAACGGGAGATTGATGATCTTATGGACTTGATTGATGAAATATGA 1860 0.4108 MRSIPFLFLFLFPILFAFPFLSSPVLSASDLILAKVDRRIDLTSQIVRVTTSLKVENTGSDVVSEILLSFPESQANHLAYLKATLSEGKGKVKPSPGVGLPVEVVHPKDFPPALTIYSVSLPKGLGKGDSLTLDVLAVLTHTLQPFPEKINQGDIQLLLFQESAQYLSPYAVKVQSLTVKLPEARIESYTKLENAKLQGSELKYGPYENLPPFSYLPIVIHFENNQPFAVAKELVREIEISHWGNVQITEHYDIIHAGAQSKGEFSRLDYQTRPYLRGASAFRRLVAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELEIEPRYPMFGGWKTAFTIGYGLPLRDYLFGSEGKRFLNITFGAPINQLVIDTLFVKVVLPEGSKDISVSAPFPVKQWQETKLSHLDIGGRPVVVLEKNNVVPEHNEHFQVYYKFNSLSMLREPLMLISGFFFLFVACIVYTHADISISKSSASYLAKLQWDEVQATIQQVHGIISRCLTAHNKLETSLHDLSRTGDIQGCKATRKSVDSSLKELSKELKLPLAFLQSSPQAAQILPKVEELVAKERELQDKLLAKHTTVVDCYEKKLGGREIENRIAPQQQKINSLKREIDDLMDLIDEI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00178 619 Pfam Ribophorin I 34 459 IPR007676 GO:0006486|GO:0016021
Cca07g00178 619 Coils Coil 602 619 - -
Cca07g00178 619 PANTHER RIBOPHORIN I 9 598 IPR007676 GO:0006486|GO:0016021
Cca07g00178 619 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 9 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00178 Cca-Chr7 2254431 2259002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00178 29 557 Miscellaneous Gene Families AT1G76400 69.376 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00178 K12666 - gmx:100817203 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00178 07 2254431 2259002 Cca07g00178 07 2254431 2259002 ECH