Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00166 ATGGCCACCGAAGCTTCCCCTTCCTCTGCCGAAAcgcctccgcttcctcccaagccaccgccgccgccggcaccaccggctgcgtctGCTGCGAAGCCGGAGGCGCCATTGTCCGATTCAAAAGCATCCGCGGACGCGAACGTAATCGTGGTCCCGAGCTACTCTCGATGGTTCTCATGGGATTCGATTCACGAATGCGAGGTGCGTCTTCTCCCGGAGTTCTTCGAATCGGCGTCGAAAACCCCTAGGGTTTACAAGTACTACAGGAATTCCATCGTTAAGTACTTCAGATACAATCCCACCCGAAAAATCACCTTCACCGATGTCCGCAAAACGCTCGTCGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAACTTGGGGTTTGATCAATTACCACCCCTCTTCCTCGCTCGCCAAACCCTTGAAGTGGGACGACAGAGAGACCAAGCCCGATTCTGCTTCCAACTCCACCGAATCTTCTTCTGCTCCTGCCAAAGAAACCTCCAAGAGACTCTGCAGTGGCTGCAAAGCTGTCTGCACCATTGCTTGTTTCGCTTGTGACAAGTATGATTTGACTCTTTGTGCGAGGTGTTACGTTCGCGGCAATTATAGAGTCGGTGTGAATTCATCGGATTTTAGGCGAGTGGAGATAAGCGAGGAGACAAAGACGGATTGGTCTGAAAAGGAGATCACGAATCTTCTGGAAGCTATTACGCATTTTGGTGATGACTGGAAGAAGGTTTCTCAGCATGTTGCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTTTGAAGCTTCCCTTTGCGGATCAATTCCTGCATTATCAACAACACCCTGCCGGCAATGGCACTGATGATGGTTGTAATCAGTTAAAGAGGGTAACTAATGCTGATGCTGAATCTGAATTGGATAGCAGAATGCGTCTCACACCTCTTGCTGATGCTAGCAATCCTATTATGGCTCAGGCTGCTTTCCTGTCTGCCTTGGCAGGGCCAGAAGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAGAATAAGTTATCGGTCATTTCCGAGGAATGCATTGCTGCAAGATGCCGGTATCACATCAAACGGTGGTAATACTTCAGATTCATTTCAAGGATCGCGATTGCATGCAAATATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGGAATTTCCGAGATTATAAAAGTTCAGATGAAAAATATCCAAGACAAGCTTCTTCATTTTGAAGATTTAGATCTTCTGATGGAAAAAGAAAGCCAGCAGCTGGAGCAAATTAAAAGCATGTTTTTTCTTGATCAGCTTACTCTTTTATTTCATAAATCATCGGCACCAAAATCCGGAGAATGCCCAGAAGGCAATTATGTAAAGATGAACTGTGACTGA 1437 0.4454 MATEASPSSAETPPLPPKPPPPPAPPAASAAKPEAPLSDSKASADANVIVVPSYSRWFSWDSIHECEVRLLPEFFESASKTPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHPSSSLAKPLKWDDRETKPDSASNSTESSSAPAKETSKRLCSGCKAVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKEITNLLEAITHFGDDWKKVSQHVAGRTEKECVAHFLKLPFADQFLHYQQHPAGNGTDDGCNQLKRVTNADAESELDSRMRLTPLADASNPIMAQAAFLSALAGPEVAQAAAQAALTTLSEVYKATRISYRSFPRNALLQDAGITSNGGNTSDSFQGSRLHANIQLEKEELDVEKGISEIIKVQMKNIQDKLLHFEDLDLLMEKESQQLEQIKSMFFLDQLTLLFHKSSAPKSGECPEGNYVKMNCD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00166 478 Gene3D - 55 139 IPR036388 -
Cca07g00166 478 SUPERFAMILY Homeodomain-like 46 144 IPR009057 -
Cca07g00166 478 Pfam SWIRM-associated region 1 393 457 IPR032451 -
Cca07g00166 478 MobiDBLite consensus disorder prediction 146 166 - -
Cca07g00166 478 ProSiteProfiles Myb-like domain profile. 221 271 IPR001005 -
Cca07g00166 478 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 1 471 - -
Cca07g00166 478 SMART sant 225 273 IPR001005 -
Cca07g00166 478 MobiDBLite consensus disorder prediction 10 30 - -
Cca07g00166 478 Pfam Myb-like DNA-binding domain 227 270 IPR001005 -
Cca07g00166 478 Pfam SWIRM domain 52 135 IPR007526 GO:0005515
Cca07g00166 478 Gene3D - 224 275 - -
Cca07g00166 478 PANTHER SWI/SNF COMPLEX-RELATED 1 471 - -
Cca07g00166 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 275 IPR017930 -
Cca07g00166 478 SUPERFAMILY Homeodomain-like 225 274 IPR009057 -
Cca07g00166 478 ProSiteProfiles SWIRM domain profile. 49 144 IPR007526 GO:0005515
Cca07g00166 478 MobiDBLite consensus disorder prediction 1 39 - -
Cca07g00166 478 CDD SANT 229 270 IPR001005 -
Cca07g00166 478 ProSiteProfiles SANT domain profile. 224 275 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00166 Cca-Chr7 2120584 2124061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00166 156 267 EF-hand Containing Proteins AT3G07740 28.346 8.82e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00166 K11649 - gmx:100779777 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00166 07 2120584 2124061 Cca07g00166 07 2120584 2124061 ECH