Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00145 ATGGCTTCAATTCTTCTCTCTCTTTCTCTATTGGCCATCGCCCTCTCCCTCGCTGACTCACAATCCTTCGTCGGCGTAAACTACGGCCAGGTCGCCGACAACCTCCCGCCGCCGGAAGCCACGGCCAAGCTCCTCAAGTCCACCACCGTCGGGAAACTCCGCCTGTACGGCGCCGATCCCGCCATCATCAAGGCCCTCGCGAATTCCGGCATCGAAATCGTGATCGGCGCGGCCAACGGCGACATTCCGAGCCTGGCCGCCGATCCGAACGCGGCGACTCAGTGGGTGAACGCGAACGTGGTGCCGTACTACCCCGGCAGCAAAATCACGCTGATCACCGTTGGCAACGAGATTCTGACCCTGGCAGACGAAGGCCTCGTCCCGCAGCTTGTCCCGGCGATGCGAAATCTCCAAAATGCCCTGAACGCGGCCTCCCTCGGCGGCAAGATCAGAGTCTCCACCGTCCACTCCATGGCCGTGTTGACTCAGTCGGATCCTCCGTCGTCCGGGTTGTTCAACCCGGCGCTCCAAGACACGCTGAAGCAGTTGCTCACTCTTCTCAAAGATAACAAAGCGCCCTTCACCATCAACCCGTACCCGTTCTTCGCTTACCAGAGCGACCCGCGACCCGAAACGCTCGCCTTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTCGACTCGGGCAACGGGAAGCTCTACACTAACATGTTCGATGCCCAGGTTGATGCTGTACATTCTGCTTTGAGTGCTATGGGGTTCCAGGACGTGGAGATTGTGGTTGCTGAGACAGGATGGCCCTCACGTGGGGACAGCAACGAAGTAGGACCTAGTGTTGAAAATGCAAAAGCTTATAACGGCAACCTCATTACTCATCTTAGATCATTGGTTGGAAGCCCTTTGATGCCTGGAAAGTCTGTGGAAACTTACATTTTCGCTCTCTATGATGAAAATCTAAAACCAGGCCCGGGATCTGAACGCGCATTTGGACTGTTCAAAACCGATCTTAGCATGTCATACGATGTTGGCTTAGCCAAGTCTAGCCAGCAGACTCCATCAACTAGTCCAACAGCTCCGGTTACTCCAGCACCGAACACTGCTGGATGGTGTGTACCCAAAGCTGGAGTTTCTGATAATCAGTTGCAGTCCAATATTGACTATGCATGTAGCCAAGGCATAGATTGCAGGCCAATTCAACCAGGAGGCGCGTGCTTTGAGCCTAACACAGTAGCATCCCATGCTGCATTTGCCATGAATCTATACTACCAAACTTTTGGCAGAAATCAGTGGAACTGTGATTTCTCTCAAACAGCAACGCTCACATCCCAAAACCCAAGTTACAATGCATGCGTTTACACTGGTGGGAGCACCTGA 1371 0.5434 MASILLSLSLLAIALSLADSQSFVGVNYGQVADNLPPPEATAKLLKSTTVGKLRLYGADPAIIKALANSGIEIVIGAANGDIPSLAADPNAATQWVNANVVPYYPGSKITLITVGNEILTLADEGLVPQLVPAMRNLQNALNAASLGGKIRVSTVHSMAVLTQSDPPSSGLFNPALQDTLKQLLTLLKDNKAPFTINPYPFFAYQSDPRPETLAFCLFQPNSGRVDSGNGKLYTNMFDAQVDAVHSALSAMGFQDVEIVVAETGWPSRGDSNEVGPSVENAKAYNGNLITHLRSLVGSPLMPGKSVETYIFALYDENLKPGPGSERAFGLFKTDLSMSYDVGLAKSSQQTPSTSPTAPVTPAPNTAGWCVPKAGVSDNQLQSNIDYACSQGIDCRPIQPGGACFEPNTVASHAAFAMNLYYQTFGRNQWNCDFSQTATLTSQNPSYNACVYTGGST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00145 456 Pfam X8 domain 368 438 IPR012946 -
Cca07g00145 456 MobiDBLite consensus disorder prediction 344 363 - -
Cca07g00145 456 SMART X8_cls 367 451 IPR012946 -
Cca07g00145 456 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 9 448 IPR044965 GO:0004553|GO:0005975
Cca07g00145 456 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 9 448 - -
Cca07g00145 456 MobiDBLite consensus disorder prediction 344 361 - -
Cca07g00145 456 Gene3D - 364 452 - -
Cca07g00145 456 Pfam Glycosyl hydrolases family 17 24 341 IPR000490 GO:0004553|GO:0005975
Cca07g00145 456 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
Cca07g00145 456 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Cca07g00145 456 Gene3D Glycosidases 23 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00145 Cca-Chr7 1827748 1831441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00145 18 451 Miscellaneous Gene Families AT2G16230 65.517 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00145 - - gmx:100778892 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00145 07 1827748 1831441 Cca07g00145 07 1827748 1831441 ECH