Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00121 ATGGCTAGCGATTCTTCTGCTATCTCCAACGGAGACAACAACGACAATGTCAATCCGCCACCAAACCTACAAAGGACTTACCAAGTGGTAGTTGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCTACTGATCTCAAATTTTTTAAGGAAATCACAATGAAAACATCTGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACTTGGGAGAGTATTCCTCTCGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGGTCAGGCAGCTTTGATATTGCAACGGCAGAGAATGTTGTTATATGTGGAAGTATGCCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGACAGATATTTAGAGAGGCTCTGGATGCACCTGGATGTGAAGCCATCCATTTAACAGAAATTCAGTCAAGCATTGAGTGCGACACTTTTATGCCTCCAGTTGATTCCACTATATTTTGTCCATGGTACTCATCCTTTCCTAAAGTGGAAAACGAAATCCGCTATTCTTTCACCACTTTTGTGCGTGTAAGGAGTTCAGCTGCAGAGTCCCCAAGTCAGAATATCCATCCACATTTTGATAATAATTCTGACAATCCACATTTTGATAATAATTCTGACTCCTTAAAGTTTGAGGTCAAAGATTTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACACGAGGAGTATTTGTATCTTAAGCTGGTTCAAGACATCATTTCTGAAGGTACAACTAAGGTTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGATTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATTGTATTGGTTTGACAGAGAGGGAAGAGGGTGACTTGGGGCCTGTTTATGGGTTTCAATGGAGGCATTTTGGTGCCAGATATACTAACATGCATGATGACTACTCCGGCCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTAATGATCGGCGAATCATTTTCTCTGCATGGAATCCAGCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCTCATGGGGAGTTATCATGTCAAATGTACCAGCGATCTGCTGACATGGGTCTGGGTGTTCCATTTAATATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCATGTTTGTGATCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATACACATGTTTACAGCAATCATGTGAATCCCTTACAGGAGCAGCTCCATAACCTGCCAAAACCATTTCCAACTTTGAAAATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATAATCCTCACCCGAAGATTAATATGAAGATGTCTGTTTAA 1620 0.4111 MASDSSAISNGDNNDNVNPPPNLQRTYQVVVAATQDWGIGKDGKLPWRLPTDLKFFKEITMKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMPSALELLAASPYSLSIEKVFVIGGGQIFREALDAPGCEAIHLTEIQSSIECDTFMPPVDSTIFCPWYSSFPKVENEIRYSFTTFVRVRSSAAESPSQNIHPHFDNNSDNPHFDNNSDSLKFEVKDFSFLPKMIFERHEEYLYLKLVQDIISEGTTKVDRTGTGTLSKFGCQMRFNLRRSFPLLTTKRVFWRGIVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDCIGLTEREEGDLGPVYGFQWRHFGARYTNMHDDYSGQGFDQLLDVINKIKHNPNDRRIIFSAWNPADLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDTHVYSNHVNPLQEQLHNLPKPFPTLKINPKKKDIDSFVAADFKLIGYNPHPKINMKMSV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00121 539 CDD DHFR 30 202 IPR001796 GO:0004146|GO:0046654
Cca07g00121 539 SUPERFAMILY Dihydrofolate reductase-like 22 203 IPR024072 -
Cca07g00121 539 Pfam Thymidylate synthase 259 539 IPR023451 -
Cca07g00121 539 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 240 539 IPR036926 -
Cca07g00121 539 ProSitePatterns Thymidylate synthase active site. 401 429 IPR020940 GO:0004799|GO:0006231
Cca07g00121 539 PIRSF DHFR-TS 9 539 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cca07g00121 539 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 38 60 IPR017925 GO:0004146
Cca07g00121 539 PANTHER THYMIDYLATE SYNTHASE 1 1 539 IPR045097 GO:0016741
Cca07g00121 539 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 248 539 IPR036926 -
Cca07g00121 539 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 539 - -
Cca07g00121 539 Pfam Dihydrofolate reductase 28 203 IPR001796 GO:0004146|GO:0046654
Cca07g00121 539 CDD TS_Pyrimidine_HMase 259 492 IPR023451 -
Cca07g00121 539 Hamap Thymidylate synthase [thyA]. 256 539 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Cca07g00121 539 TIGRFAM thym_sym: thymidylate synthase 259 539 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g00121 539 Gene3D Dihydrofolate Reductase, subunit A 12 205 IPR024072 -
Cca07g00121 539 PRINTS Thymidylate synthase family signature 297 318 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 PRINTS Thymidylate synthase family signature 390 409 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 PRINTS Thymidylate synthase family signature 416 431 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 PRINTS Thymidylate synthase family signature 434 460 IPR000398 GO:0004799|GO:0006231
Cca07g00121 539 PRINTS Thymidylate synthase family signature 472 489 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00121 Cca-Chr7 1525365 1531780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00121 K13998 - gmx:547833 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00121 07 1525365 1531780 Cca07g00121 07 1525365 1531780 ECH