Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00120 ATGGCTGAAGTTATGTCCACGCCTGTTGACCGACTCATGAAACCTGTTCATGAACTTGAATGTTCTGACGATGAAAAGAAGAAAAGGGTTGGATCGTTCAAGAAGGTGGCAATCAGTGCCTCATCTAAGTTGAAAAATTCCCTGAGCAAGAGGGGGAGGAGGCACAGCAGGGTTATGTCTCTATCCATTGCTGATGACATTGATGTAGAAGAGTTGCAAGCAGTTGATGCTTTTCGCCAAGCACTAATCTTGGAAGAGCTATTGCCTTCAAAACATGATGATCATCACATGATGCTAAGATTCCTAAGAGCAAGGAAGTATGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTTAAATGGAGGAAGGAATTTGGTGCTGACACTATCGCGGAGGATTTTGAATTCGAGGAACAGGATGAAGTTCTAAAGTACTACCCACAAGGACATCATGGGGTTGACAAGGAGGGACGACCTGTTTACATTGAAAAGTTGGGCCAGGTTGACTCTACCAAGCTGATGCAAGTAACAACAATGGATCGTTATCTCAAATACCATGTAAAAGAGTTTGAGAGGACCTTTGCTGTTAAGTTGCCTGCATGTTCCATTGCAGCAAAGAAGCACATTGACCAGAGCACAACTATTTTGGATGTGCAAGGAGTGGGCCTTAAAAGTTTGAACAAAGCTGCTAGGGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGACAACTACCCTGAGTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCATTAAGTCGTTCCTAGATCCCAAGACCACCGCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGCACTTGCACTTGTGAAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGGCCATGGAACAACCCAGACATCTTGAAGATGATTCAAAATGGCGAGGGCAAATGCAAGAGAAAAATCTTATCCGGGATTGAGGAGAAAACAATCACAGAAGATAATACAACACCTCAAAATGTAGCAATCAAAGAATCATTTCCACAGACATACGATGTTGATGTCAAGTGTGTATCCCAAAAAGGCGTAAAGAAATGTGGTGCGTATCAGTGTGACGCATTTGGCACTGTGCTCAATAAGCCAATGGATTCATCCTGGAATAAATTAATACAAAATGATAAAGTTGCACTTTCTAAAGAATGTTTCCCTAGCAAGAGTGCTTCTGATGGGTTGAGCAACCAGTTCATTGGTGGAATAATGGCGTTTGTGATGGGAATAGTGACCATGATCCGCATGACAAGGAACATGCCAAGGAAAATCACTGAAGCAGCACTGTATGGGAGCGCAGGATTATATGATGGTAGCATAATGAAAGCGGCGGACATATCATGCAATGATTACATGGCCATGATGAAGCGCATGGCTGAACTAGAAGAGAGAATGAGCGTCCTCAGCAAGAGACCTAGCATGCCACTTGAAAAGGAGGAAGTGCTCACTAATGCTCTCAGCAGAGTCACCACTCTGGAACAAGACTTGGTTTCCACCAAAAAGGCACTTGATGATGCCCTTACTCGACAAGTGGATCTCCAAGCTCAAATTGagaagaagaaaaagaagaagTTGTTCCGCGGCCTCCGCTGTTTCACTGCGTGA 1722 0.4326 MAEVMSTPVDRLMKPVHELECSDDEKKKRVGSFKKVAISASSKLKNSLSKRGRRHSRVMSLSIADDIDVEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWADMLKWRKEFGADTIAEDFEFEEQDEVLKYYPQGHHGVDKEGRPVYIEKLGQVDSTKLMQVTTMDRYLKYHVKEFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCEDKGGCMLSDKGPWNNPDILKMIQNGEGKCKRKILSGIEEKTITEDNTTPQNVAIKESFPQTYDVDVKCVSQKGVKKCGAYQCDAFGTVLNKPMDSSWNKLIQNDKVALSKECFPSKSASDGLSNQFIGGIMAFVMGIVTMIRMTRNMPRKITEAALYGSAGLYDGSIMKAADISCNDYMAMMKRMAELEERMSVLSKRPSMPLEKEEVLTNALSRVTTLEQDLVSTKKALDDALTRQVDLQAQIEKKKKKKLFRGLRCFTA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00120 573 Gene3D - 127 338 IPR036865 -
Cca07g00120 573 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Cca07g00120 573 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Cca07g00120 573 CDD SEC14 144 308 IPR001251 -
Cca07g00120 573 SUPERFAMILY CRAL/TRIO N-terminal domain 64 134 IPR036273 -
Cca07g00120 573 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 563 - -
Cca07g00120 573 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Cca07g00120 573 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Cca07g00120 573 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Cca07g00120 573 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Cca07g00120 573 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 563 - -
Cca07g00120 573 Coils Coil 224 244 - -
Cca07g00120 573 Coils Coil 542 562 - -
Cca07g00120 573 SUPERFAMILY CRAL/TRIO domain 138 335 IPR036865 -
Cca07g00120 573 Coils Coil 490 510 - -
Cca07g00120 573 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
Cca07g00120 573 Gene3D - 33 126 - -
Cca07g00120 573 SMART sec14_4 139 310 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00120 Cca-Chr7 1512479 1517197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00120 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 1.73e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00120 - - gmx:100798374 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00120 07 1512479 1517197 Cca07g00120 07 1512479 1517197 ECH