Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00099 ATGCAGGTGAAAGCCCTATCATTAGCCCTCCCTCCCTTTTCCAACAATCCTGAGTCCCAAAGGCAAAGGCAGAGATTGTGTCTTCATTTGCGTCCTCTTTCACACCACAACCGTTGCTCCAAATTATCACTCACATCTCAGACCCATTCCCAAGAGGAACAATCTTCTATTTCTGACACACTAACTGCACACACTATATGGGCCCAAATGAAGCACATTGCCATGTTTAGTGGGCCTGCCACTGCCCTCTGGATCTCTGCGCCCTTCATGAGCCTCATCTCCACCGCCCTCGTTGGTCGACGCAGCTCCACTCACCTCGCTGCTTTAGgccctggaaccgttttttgtgataacatgaacctcttgttcatgttcctttccatagcaacttccaacttggttgctacttcgcttgcaaaagggGACAAAAAACAAGTGCAGCATCAAATATCTATGTTGCTTTTTGTTGCCTTCATTTGTGGCTCACTCATGCTTTTGTTTACGCAATTTCTTGGCTCCTGGGCGTTAACCTCTTTTACTGGGCCAAAGAATGTACATATTGTACCAGCAGCAACCAAATATGTTCAGATTCGTGGCTTGGCATGGCCTGCTGTTCTTTACGGACTGGTTGCTCAAAGTGCAAGtcttggcatgaaagattcgtggggacctctgaaggctttggtcattgccagcactgtgaatggctttggtcatgtaatcctatgcagttttctgcggtatggtatagagggtgcagcatgggcaacaatggcatcccagATTGTAGCAGCTTTTATGATGATCGAAGCACTGAACAAgaaaggatacaatgcttttggtttttcatttccatcgttctccgacttcctgcagatatttgtgattgctgcacctgtgtttgtgacgatgttctcaaagGTGGCTTTTTACTCCCTTCTTACATATTTCGCCACAGCTAACGGTACTCATACAGTTGCAGCTCATCAGgttatgattcaaatgtacagcatatgtgtagtatggggggagcctctttctcaaaccgcacaatcatttatgcctgagttattGTACGGGTTCAACCGaagtttgaagaagGCACGAATTCTGCTGAAGTCACTGGTGATTATTGGAGCATTGCTAGGACTAGTAATCGGTCTTGTAGGAATGTCCGTTCCTTGGTTATTTCCAAACATATTTACCCCTGATCTTAAGGTCATACGTGAGATGCACAATGTGTTGATTATGTTCTTTATTGCTTTATCTGTGTCACCCTGTACTCACAGCCTCGAGGGTACATTATTGGCTGGCAGGGACCTTAACTTTATTAGCTTATCAATGAGTGGATGCTTCTCCCTCGGAGCCCTTTTACTATTGATTGTGAGTAGTAGAGGCTATGGTTTGCCTGGTTGCTGGTGTGCTCTTGTAGGATTTCAATGGGCTCGATTCTTCCTTGCTCTCCGGCGCCTTTTCTCTCCTAATGGCGTTCTTTACTCTGAGGAAGACCAGTTTGAACTTGAAAAAATGGAAGCTGCTAAGTTGTGA 1548 0.3307 MQVKALSLALPPFSNNPESQRQRQRLCLHLRPLSHHNRCSKLSLTSQTHSQEEQSSISDTLTAHTIWAQMKHIAMFSGPATALWISAPFMSLISTALVGRRSSTHLAALGPGTVFCDNMNLLFMFLSIATSNLVATSLAKGDKKQVQHQISMLLFVAFICGSLMLLFTQFLGSWALTSFTGPKNVHIVPAATKYVQIRGLAWPAVLYGLVAQSASLGMKDSWGPLKALVIASTVNGFGHVILCSFLRYGIEGAAWATMASQIVAAFMMIEALNKKGYNAFGFSFPSFSDFLQIFVIAAPVFVTMFSKVAFYSLLTYFATANGTHTVAAHQVMIQMYSICVVWGEPLSQTAQSFMPELLYGFNRSLKKARILLKSLVIIGALLGLVIGLVGMSVPWLFPNIFTPDLKVIREMHNVLIMFFIALSVSPCTHSLEGTLLAGRDLNFISLSMSGCFSLGALLLLIVSSRGYGLPGCWCALVGFQWARFFLALRRLFSPNGVLYSEEDQFELEKMEAAKL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00099 515 CDD MATE_DinF_like 69 493 IPR044644 -
Cca07g00099 515 Pfam MatE 86 235 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00099 515 TIGRFAM matE: MATE efflux family protein 79 473 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00099 515 PANTHER PROTEIN DETOXIFICATION 45 503 - -
Cca07g00099 515 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 45 503 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00099 Cca-Chr7 1303107 1309376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00099 K03327 - ccaj:109803055 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00099 07 1303107 1309376 Cca07g00099 07 1303107 1309376 ECH