Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00095 ATGAGTTCAGACagccgcagcaggagcagaagcaggagcaggagcCCAATGGACCGTAAGATCCGTTCTGATCGATTTTCCTATCGTGAAGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAGAGGCCTGGTCATTATGCAAGAGAATGCCCTAATGTTGCAATTTGCCACAACTGTGGCCTCCCTGGGCACATTGCTTCTGAATGTACCACAAAGTCGCTGTGCTGGAACTGTAAAGAACCCGGTCACATGGCCAGCAATTGTCCCAATGAGGGCATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCTAGGGAATGCACAGCTCCTCCGATGCCTCCAGGGGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGCCACATTGCAGCTGAATGTACGAATGAGAAGGCATGCAACAACTGTCGAAAGACAGGCCACTTGGCACGGGATTGTCCTAATGATCCTATTTGTAACTTGTGTAACGTTTCTGGACATGTGGCTAGACAGTGTCCGAAAGCCAACGTTCTCGGAGACCGCAgtggtggtggtggtggtggcggtggaggtggtggtggtgctcgtggtggtAGTTACCGAGATGTTATATGCAGGAACTGCCAGCAATTAGGTCACATGAGTAGGGATTGCATGGGCCCCTTGATGATTTGCCACAATTGCGGAGGCCGTGGTCACCTGGCATATGAGTGCCCTTCGGGTCGGTTTATGGACCGCTACCCCAGGAGTTTTATTTTATAG 789 0.4474 MSSDSRSRSRSRSRSPMDRKIRSDRFSYREAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGGGGGARGGSYRDVICRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRSFIL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00095 262 Gene3D - 208 251 - -
Cca07g00095 262 Gene3D - 82 101 - -
Cca07g00095 262 Gene3D - 9 81 - -
Cca07g00095 262 SUPERFAMILY Retrovirus zinc finger-like domains 125 165 IPR036875 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 234 249 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 233 249 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Pfam Zinc knuckle 213 227 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 PANTHER OS10G0545300 PROTEIN 1 260 - -
Cca07g00095 262 SUPERFAMILY Retrovirus zinc finger-like domains 38 82 IPR036875 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SUPERFAMILY Retrovirus zinc finger-like domains 205 251 IPR036875 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 214 227 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 213 229 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 Gene3D - 147 195 - -
Cca07g00095 262 Gene3D - 102 146 - -
Cca07g00095 262 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Cca07g00095 262 PANTHER - 1 260 - -
Cca07g00095 262 MobiDBLite consensus disorder prediction 1 29 - -
Cca07g00095 262 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00095 K09250 - gmx:100775501 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00095 07 1249387 1255527 Cca07g00095 07 1249387 1255527 ECH