Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00091 ATGGCACTGCCCATTCATCTTCTTCTTCTATTCCTCCTCCTAAATTCAGCAACTGCTCACGACTACCACCAGGCATTGTCCAAAGCAATTCTATTCTTCGAGGGCCAACGCTCCGGCTTCTTGCCGCAAGACCAGAGGCTGAACTGGCGCGCCAATTCCGGCCTCAGCGACGGTTCGGCCTACAACGTAGACCTCACCGGCGGCTACTACGACGCCGGCGACAACATAAAGTTCGGTTTTCCGATGGCATTCACCACCACAATGCTTGCCTGGAGTGTCATTGAGTTCGGAGACATGATGCCTCCCAATGACCACCGGAACGCGCTTCTCGCCATCCGTTGGGCTACCGATTATTTCCTCAAAACGCTTTCTCACCCCAACCGCATTTTCGTTCAGGTGGGGGATCCAATCTCCGACCACAACTGTTGGGAAAGGCCAGAGGACATGGACACAAGCAGGAAAGTCTACGCTGTCGATGCACCAAACCCTGCTTCGGATGTCGCCGGCGAAACCTCCGCCGCACTAGCTGCTGCGGGTGCCTACAGTGACAATGCTCATATTAGGGAGGGTGTATGCCCCTATTATTGTGACTTCGATGGTTATCAGGACGAATTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACTCAGGACCAAAATTTCCTCGACTACATTCAAAGTAATGGCAAAACGCTTGGTGCTGAAGAAAATATAAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTTAACGTTCTTGTCTCCAAGGAATTTCTGGAAGGAAACGTGGCGTCTCTTGAATCTTACAAGACTTCCGCAGAGAGCTTTCTGTGCACACTGATACCCGAAACATCAAGTTCACATATTGAGTACACTCCTGGTGGACTCATATACAGGCCTGGGGGTAGCAACTTGCAGCATGCAACTTCAATTGCTTTCCTTGAATTGGTTTACGCTAATTATCTATCTCGCACTTCACAAACCATCAATTGTGGGAACATCTATGTTAACGCACAAACACTTCGCCAGCGTGCTAAGAAGCAAGTTGATTACATTTTGGGGGATAACCCAATGGGTATGTCCTACATGGTTGGGTACGGCGACAAGTATCCGCAGCGTATTCACCATCGTGGCTCCTCTGTACCCTCTATTAAGGACCACCCTCAGTTCATTGCGTGCAAAGAGGGATCAATCTACTTCAACTCGACCAATCCTAATCCCAATGTTCTTGTGGGAGCCATTGTGGGAGGACCCGGAGAAGATGATATGTATGGGGATGAAAGGGCTGATTTTAGGAAGTCCGAACCAACCACATATATTAATGCACCCTTTGTTGGGATATTAGCATACTTTGTTGCTAATCCCAATCCTTGA 1374 0.4934 MALPIHLLLLFLLLNSATAHDYHQALSKAILFFEGQRSGFLPQDQRLNWRANSGLSDGSAYNVDLTGGYYDAGDNIKFGFPMAFTTTMLAWSVIEFGDMMPPNDHRNALLAIRWATDYFLKTLSHPNRIFVQVGDPISDHNCWERPEDMDTSRKVYAVDAPNPASDVAGETSAALAAAGAYSDNAHIREGVCPYYCDFDGYQDELLWGAAWLRRATQDQNFLDYIQSNGKTLGAEENINEFGWDNKHAGLNVLVSKEFLEGNVASLESYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNIYVNAQTLRQRAKKQVDYILGDNPMGMSYMVGYGDKYPQRIHHRGSSVPSIKDHPQFIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDMYGDERADFRKSEPTTYINAPFVGILAYFVANPNP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00091 457 Gene3D - 18 182 IPR012341 GO:0005975
Cca07g00091 457 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 351 377 IPR018221 -
Cca07g00091 457 Pfam Glycosyl hydrolase family 9 22 180 IPR001701 GO:0004553|GO:0005975
Cca07g00091 457 Pfam Glycosyl hydrolase family 9 188 448 IPR001701 GO:0004553|GO:0005975
Cca07g00091 457 Gene3D - 183 456 IPR012341 GO:0005975
Cca07g00091 457 PANTHER ENDO-1,4-BETA-GLUCANASE 179 456 - -
Cca07g00091 457 SUPERFAMILY Six-hairpin glycosidases 6 453 IPR008928 GO:0005975
Cca07g00091 457 PANTHER ENDO-1,4-BETA-GLUCANASE 8 178 - -
Cca07g00091 457 PANTHER ENDOGLUCANASE 24 179 456 - -
Cca07g00091 457 PANTHER ENDOGLUCANASE 24 8 178 - -
Cca07g00091 457 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 424 442 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00091 Cca-Chr7 1213096 1215292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00091 1 454 Glycoside Hydrolase AT1G70710 56.996 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00091 K01179 - gmx:100799911 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00091 07 1213096 1215292 Cca07g00091 07 1213096 1215292 ECH