Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00084 ATGTTTCTTGACGGATATGGGTATGAGGGGACATCATCATTTGAACAGATATATCGATGTTACTCTGCTTCATTTATTGAAAAGTCCGAAATTGAAAATGGCGATAAAATTATAATGCCTCCTTCAGCCCTTGATCGTCTAGCTTTTCTACGTATAGATTATCCTATGATGTTTGAACTCAGAAATGGTGCTTCTGAGAGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCAGATGAAGGAACTATATATATGCCATACTGGATGATGCAGAATATGGTTTTACAAGAGGGAGACACCGTTAGAGTGAAATATGTATCACTTCCAAAGGGAACATATGTTAAATTACAACCCCACACAAAGGACTTTTTTGATATTTCCAACCCAAAAGCTATCTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACCATCATGGTGACATACAACAACAAAAAGTATTATATAGATGTTATAGAAACAAAACCTAATAATGCTATAAGCATCACCGAGACAGACTGTGAGGTGGACTTTGCTCCTTCCTTGGATTACAAGCCTAATACTGCAAACAAAACACTAGACAATGCTAAGTTGAACCCATTTTTCGGGACTGGGAGACGCTTGGATGGAAACCAAATTCCAAATGTCAATTCACTGTCTTCTACAACATCTAGTTCACCAAGTTTTTCTCGTCCATCTCAAGGAAAGATAGTGTTTGGATCAAATTTTTACCGTTCAAAAGAAACAGGAAAGGAAAAGACCGAGTCAAAGCAAGAGCCACCCCATCAGAAGCAACCGAGATTTCAGCCTTTCATTGGGAAGAAATACTCCCTAAAGGGTTGA 855 0.386 MFLDGYGYEGTSSFEQIYRCYSASFIEKSEIENGDKIIMPPSALDRLAFLRIDYPMMFELRNGASERVSHCGVLEFIADEGTIYMPYWMMQNMVLQEGDTVRVKYVSLPKGTYVKLQPHTKDFFDISNPKAILETTLRKFSCLTTGDTIMVTYNNKKYYIDVIETKPNNAISITETDCEVDFAPSLDYKPNTANKTLDNAKLNPFFGTGRRLDGNQIPNVNSLSSTTSSSPSFSRPSQGKIVFGSNFYRSKETGKEKTESKQEPPHQKQPRFQPFIGKKYSLKG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00084 284 Gene3D - 110 183 - -
Cca07g00084 284 MobiDBLite consensus disorder prediction 220 244 - -
Cca07g00084 284 MobiDBLite consensus disorder prediction 250 266 - -
Cca07g00084 284 MobiDBLite consensus disorder prediction 220 284 - -
Cca07g00084 284 PANTHER UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG 1 228 - -
Cca07g00084 284 PANTHER UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG 219 284 - -
Cca07g00084 284 Gene3D - 5 108 IPR042299 -
Cca07g00084 284 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 219 284 IPR004854 GO:0006511
Cca07g00084 284 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 228 IPR004854 GO:0006511
Cca07g00084 284 Pfam Ubiquitin fusion degradation protein UFD1 14 184 IPR004854 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00084 Cca-Chr7 1170793 1174023 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00084 K14016 - gmx:100795133 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00084 07 1170793 1174023 Cca07g00084 07 1170793 1174023 ECH