LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00083	ATGCCTGCCCTGGCTTGTTGCGTGGACGCTGCAGCACCTCCCACCTATGCATTTGCCGCTGACATCTCTTTTCCGGCGCCGGTCCCTTTCACCCCGCCCACCACACCCGACAACCATTGGTCGCCCTCCCTCTCCTCCGCCCTCTACAACGTAGAAGGCTGGGGCGGCCCCTACTTCGCCGTCAACACCGCCGGTAACATCTCCGTGCGCCCCCACGGCTCCGACACCCTCTCCCACCAGGAGATCGATTTGCTTAAGATTGTGAAGAAGGCCTCCGATCCCAAGTCTCTTGGGGGTCTGGGGCTTCAGCTTCCCCTCATTGTGCGCTTCCCGGACGTCTTGAAGAACCGCTTGGAGTCACTTCAATCCGCCTTCGACTACGCTATCCAATCCGAGGGGTACGGCTCTCACTACCAAGGTGTTTACCCCGTCAAATGCAACCAGGACCGCTTCGTCGTCGAGGACATCGTTAAATTTGGTTCCTCCTTCCGCTTCGGCCTCGAGGCCGGTTCCAAGCCGGAACTGCTTCTCGCCATGAGCTGTTTGTGCAAAGGCAACGCCGAAGCGCTCTTGGTTTGCAACGGTTTCAAAGACGCCGAGTACATTTCTCTCGCCCTCGTTGCCAACAAGCTGGCGTTGAACACCGTGATTGTTCTTGAGCAGGAGGAGGAGCTCGATTTGATCCTTGATTTGAGCAAGAAGCTTTGCATTAAGCCCGTTATTGGGTTGCGTGCGAAGCTTCGAACCAAGCATGCTGGCCATTTCGGTGGGACTTCTGGGGAGAAAGGCAAGTTTGGACTCACCACCGCTCAGATTCTGCGGGTTGTGAAGAAGCTGGACCTCGCAGGCATGCTGGATTGCTTGCAACTGCTGCATTTTCATATCGGTTCTCAGATTCCATCCACCGCGTTGCTTGCTGATGGCGTGGGAGAGGCTGCGCAGATCTATTGCGAGCTGGTTCGGCTTGGGGCCAACATGCGGGTCATCGATATTGGAGGTGGACTGGGCATAGATTACGACGGTTCCAAATCGTGTGACTCGGATATTTCCGTTGGGTATGGTCTGCAAGAGTACGCGGCCGCGGTGGTTCACGCGGTTCAGTGTGTCTGCGACAGAAGGTCCGTGAAGCACCCCGTTATCTGCAGCGAGAGTGGGAGAGCCATTGTGTCTCACCATTCGGTGTTGATTTTCGAGGCAGTTGGGATGGGAGGAGGTTCTCCGGCATTGTCTACCCATTATCTGGCGGAGGAGCTCTCGGAGGATTACAGGAACCTCTCGGACGCGGCGATAAGAGGGGACTACGAAACATGCCTGGTGTACACGGAGGAGATGAAGCAGCGATGCGTGGAGCAGTTCAAACAGGGAACAGTGTGTATGGAACAGCTGGCAGCCGTAGACGGCTTGTATGAGTTGGTGAGGAAAGCGGTCGGGGCGGTGGAACCGGTTCGTACGTACCACGTGAATTTGTCTGTCTTCACGTCGATTCCCGACGCGTGGGGCATTGAACAGGTGTTTCCCATTATCCCCATTCATCGCTTGGAGGAGAAGCCCTCGGTGAGGGGTATTCTCTCGGACCTTACATGCGACAGCGATGGGAAGATTGATAAGTTCATAAACGGGGAGAGTAGCCTGCCGCTGCACGAGATGGAAGGAGGGAGTTACTATCTGGGAATGTTCTTGGGTGGGGCTTACGAGGAGGCGCTCGGCGGAGTCCACAACTTGTTCGGCGGCCCCAGCGTGGTGAGGGTGTCGCAGAGCGACGGCCCACACAGCTTCGCTGTTACGCGTGCCGTGCCGGGGCCCTCCTGTGGAGACGTCCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAGTCTCTCAAGCACCGTGCTTTTGAGTATGTCACCCCTGACAGCGCAGCGGTTCTCGCCTCTGCCCTTGCTCGCACCTTTGATAGAATGCCTTATCTGGTGCCGCTCTCTTCTTTTGAGGCCGATGCTGCTGTTCCTGCTGCCCAAGATGAGGCCGAACAGTGGTCTTATTGCTGTGCTTGA	2037	0.5685	MPALACCVDAAAPPTYAFAADISFPAPVPFTPPTTPDNHWSPSLSSALYNVEGWGGPYFAVNTAGNISVRPHGSDTLSHQEIDLLKIVKKASDPKSLGGLGLQLPLIVRFPDVLKNRLESLQSAFDYAIQSEGYGSHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNAEALLVCNGFKDAEYISLALVANKLALNTVIVLEQEEELDLILDLSKKLCIKPVIGLRAKLRTKHAGHFGGTSGEKGKFGLTTAQILRVVKKLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVGYGLQEYAAAVVHAVQCVCDRRSVKHPVICSESGRAIVSHHSVLIFEAVGMGGGSPALSTHYLAEELSEDYRNLSDAAIRGDYETCLVYTEEMKQRCVEQFKQGTVCMEQLAAVDGLYELVRKAVGAVEPVRTYHVNLSVFTSIPDAWGIEQVFPIIPIHRLEEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEMEGGSYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFESLKHRAFEYVTPDSAAVLASALARTFDRMPYLVPLSSFEADAAVPAAQDEAEQWSYCCA	678

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca07g00083	678	SUPERFAMILY	Alanine racemase C-terminal domain-like	481	586	IPR009006	GO:0003824
Cca07g00083	678	Gene3D	Alanine racemase	111	392	IPR029066	-
Cca07g00083	678	PANTHER	ARGININE DECARBOXYLASE	1	660	-	-
Cca07g00083	678	PIRSF	ARGDC	28	653	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	TIGRFAM	speA: arginine decarboxylase	40	651	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	323	336	IPR022657	-
Cca07g00083	678	Gene3D	-	407	481	-	-
Cca07g00083	678	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	142	160	IPR000183	GO:0003824
Cca07g00083	678	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	166	178	IPR000183	GO:0003824
Cca07g00083	678	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	285	298	IPR000183	GO:0003824
Cca07g00083	678	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	380	399	IPR000183	GO:0003824
Cca07g00083	678	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	562	575	IPR000183	GO:0003824
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	110	125	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	134	148	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	192	207	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	218	239	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	242	264	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	370	387	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	488	509	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	513	538	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	PRINTS	Arginine decarboxylase signature	562	583	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	142	160	IPR022653	-
Cca07g00083	678	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	49	585	IPR009006	GO:0003824
Cca07g00083	678	SUPERFAMILY	PLP-binding barrel	110	392	IPR029066	-
Cca07g00083	678	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	135	390	IPR022644	GO:0003824
Cca07g00083	678	PANTHER	ARGININE DECARBOXYLASE	1	660	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Cca07g00083	678	CDD	PLPDE_III_ADC	107	583	IPR002985	GO:0006527\|GO:0008295\|GO:0008792

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00083	Cca-Chr7	1151331	1154808	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00083	K01583		-	gmx:100793552	1184.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g00083	07	1151331	1154808	Cca07g00083	07	1151331	1154808	ECH