Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00079 ATGCTTCATCCAGCAGCGCTCACACCACCATGTCCGTTTCCCGCAGGCAGAGTTACAGTGAGGGTGTCTCCAATGGCGATTCTGAAAGGAAAGACGGTGGTGGGTTCGAGGATAAGGTGCATGGCCAATCCTCGGAGAGTCCAAATGGTGGCCAAGCAAATAAGGAGGGAGCTTTCTGACATGCTTCTCACTGACAAAGTCTTGCAGTACGCCGTTCTTCCAGAAGCTTCCTTAGGAGCCGACCGTTACCTCTCCTCCCTCACCACCATCACCGACGTCCAAGTCTCCGGTGACTTGCAGGTCGTTAAGGTCTATGTCTCTGTTTTTGGAGATGAGCGAGGCAAAGAAGTCGCCATCGCCGGCTTGAAGTCCAAGGCTAAATATGTTCGCAGTGCGTTGGGCAAGCGCATCAAGTTGCGCTTAACTCCCGAGATTCGCTTTATAGAGGACGATTCTTTCGAGAAAGGAAGCAGGGTGATTGCAATATTAGATAAAATCAAGAATGACAAGAGCACAGAGAGACAAAACAAGGACAAGTTGGATTCATCAGCTAATGCGgatgatgatgatgatgattgggatggtgaagatcctgacgaAGGAATCATTTATGTGGAATAG 621 0.4622 MLHPAALTPPCPFPAGRVTVRVSPMAILKGKTVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAVLPEASLGADRYLSSLTTITDVQVSGDLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSALGKRIKLRLTPEIRFIEDDSFEKGSRVIAILDKIKNDKSTERQNKDKLDSSANADDDDDDWDGEDPDEGIIYVE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00079 206 MobiDBLite consensus disorder prediction 185 206 - -
Cca07g00079 206 Gene3D - 41 157 IPR015946 -
Cca07g00079 206 MobiDBLite consensus disorder prediction 171 206 - -
Cca07g00079 206 ProSitePatterns Ribosome-binding factor A signature. 129 150 IPR020053 GO:0006364
Cca07g00079 206 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 33 206 IPR000238 GO:0006364
Cca07g00079 206 Hamap Ribosome-binding factor A [rbfA]. 45 163 IPR000238 GO:0006364
Cca07g00079 206 TIGRFAM rbfA: ribosome-binding factor A 41 168 IPR000238 GO:0006364
Cca07g00079 206 Pfam Ribosome-binding factor A 46 162 IPR000238 GO:0006364
Cca07g00079 206 SUPERFAMILY Ribosome-binding factor A, RbfA 41 166 IPR023799 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00079 K02834 - gmx:100812407 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00079 07 1086345 1087883 Cca07g00079 07 1086345 1087883 ECH