Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00060 ATGTCGAGCATCGTCAAGGAGATCCTGGCCAGCCCCATACAAATGGCGGACCAGGTCTCCAAGATGGCAGAAGAGGCCCAGAATTTTCGACAGGAATGTCTCGAGTTGAAGTCAAAGACGGAGAAGCTCGCCGGCCTCCTCCGCCAGGCGGCCAGGAACAGCAGCGACCTGTACGAGAGGCCAACGCGACGCATCATAGACGACACCGAACAGGTCCTCGACAAGGCCCTCGTACTCGTCACCAAATGTCGCGCCAACAGCCTCATCAAGAAGCTCTTCACCATCATCCCCGCCACCGCCTTCCGCAAGACCTCCATGCAGCTCGAGAACTCCGTCGGCGACGTCCAGTGGCTCCTCCGCGTCTCCGCCTCCGCCGACGAGCGCGACGACGAGTACCTCGGCCTCCCCCCCATCGCCGCCAACGAACCCATCCTCTGCCTCATCTGGGAGCAGGTGGCCATCCTCCTCTCCGGTGCCTCCCTGGAAGAGCGCTCCGACGCCGCCGCCTCCCTAGTCTCCCTGGCCCGCGACAACGACCGCTACGGCAAGCTCATCATCGAGGAAGGTGGCGTCCCCCCTCTCCTGAAGCTCCTGAAGGAAGGTCGAATGGACGGCCAGGAAAACGCCGCCCGAGCCATTGGCCTCCTCGGTAAAGACCCCGAGAGCGTCGAACACATCGTCAACGCCGGCGTTTGCTCCGTCTTCGCCAAAGTCCTTAAAGAAGGGCACATGAAGGTCCAGACCGTGGTCGCCTGGGCCATCTCCGAACTCGCTGGTAACCACCCCAAATGCCAGGACCATTTCGCTCAAAACAATGCCATTCGCTTGCTTGTTAGCCACCTGGCCTTCGAAACCATCCAAGAACACAGCAAGTACGCCATTGCCAACAAACACAAGTCCATTCACTCTGTTGTTCTTGCCAGCAACACTTCCACCCCCCACGACGAAGAAGATGACAATAAGCAGATTGTTCACCCCATGGGCAACCAGGCCTCCAGCCAAATGTCCAATATCGTTTCCAACACCATGGCCATCAAGGGAATGGGTgcccaggcccaagcccaagcccaagcccaagcccaaATCAATCCCAACGTTAACGACCTCCCCTCCGGGAACCCCAAAAAGCACCACAATCATAATGCCCACGTGTCTATTGCCGGCACGAGTATCAAGGGGAGGGAATTCGAAGACCCGGTGACGAAGAGGGAGATGAAGGCCATGGCTGCGAGGGCGCTCTGGATGCTCTCCAGGGGTAACTTAACGGTGTGTCGCAGCATAACGGAGTCTCGTGCTTTGCTCTGTTTCGCGGTTCTGTTGGAGAAAGGTGCAGAGGACGTGCAGTCGTATTCGGCGATGGCTTTGATGGAGATAACGGCGGTGTCAGAGCAGCACGCTGAGTTGAGGCGGTCTGCTTTCAAACCAACTTCCCCCGCTGCCAAGGCGGTGGTGGAGCAGCTTATAAAAATAATCGAAAAAGAAGAGCAAGAGCTTCTGATACCTTGCGTGAGATCCGTTGGAAACCTTGCCCGCACTTTCAGGGCCACGGAGACTCGGCTGATTGGGCCTCTGGTGAAGCTCCTGGACGAAAGAGAGGCCCATATCTGCATGGAGGTGGCCATCGCTCTTAACAAGTTCGCCTGCACGGATAACTACCTCCACGAGAACCACTGCAACGCCATCATTCAGGCAGGGGGTGCCAAGCACTTGATTCAGCTTGTTTACTTTGGAGAGCAGATGGTTCAGATTCCCTCCGTCACTCTCCTCTGTTACATTGCGTTGCACGTGCCAAAGAGCGAGACGCTGGCGCAAGAAGAGGTCCTCATAGTTCTCGAGTGGTGCACCAAGCAAGCGCATCTCATCGATGATTCTCGCATCGAAGCTCTTTTGCCCGAAGCCAAGAGTAGGCTCGAACTCTACCAATCAAGAGGAAGAGGATTCCGCTGA 1947 0.5583 MSSIVKEILASPIQMADQVSKMAEEAQNFRQECLELKSKTEKLAGLLRQAARNSSDLYERPTRRIIDDTEQVLDKALVLVTKCRANSLIKKLFTIIPATAFRKTSMQLENSVGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQVAILLSGASLEERSDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLLKEGRMDGQENAARAIGLLGKDPESVEHIVNAGVCSVFAKVLKEGHMKVQTVVAWAISELAGNHPKCQDHFAQNNAIRLLVSHLAFETIQEHSKYAIANKHKSIHSVVLASNTSTPHDEEDDNKQIVHPMGNQASSQMSNIVSNTMAIKGMGAQAQAQAQAQAQINPNVNDLPSGNPKKHHNHNAHVSIAGTSIKGREFEDPVTKREMKAMAARALWMLSRGNLTVCRSITESRALLCFAVLLEKGAEDVQSYSAMALMEITAVSEQHAELRRSAFKPTSPAAKAVVEQLIKIIEKEEQELLIPCVRSVGNLARTFRATETRLIGPLVKLLDEREAHICMEVAIALNKFACTDNYLHENHCNAIIQAGGAKHLIQLVYFGEQMVQIPSVTLLCYIALHVPKSETLAQEEVLIVLEWCTKQAHLIDDSRIEALLPEAKSRLELYQSRGRGFR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00060 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Cca07g00060 648 PANTHER ARMADILLO REPEAT ONLY 1 1 647 - -
Cca07g00060 648 Coils Coil 19 39 - -
Cca07g00060 648 Gene3D - 387 631 IPR011989 -
Cca07g00060 648 PANTHER ARMADILLO REPEAT ONLY 4 1 647 - -
Cca07g00060 648 Gene3D - 151 312 IPR011989 -
Cca07g00060 648 SMART arm_5 177 218 IPR000225 GO:0005515
Cca07g00060 648 SMART arm_5 554 594 IPR000225 GO:0005515
Cca07g00060 648 SMART arm_5 219 259 IPR000225 GO:0005515
Cca07g00060 648 SMART arm_5 420 460 IPR000225 GO:0005515
Cca07g00060 648 SMART arm_5 476 511 IPR000225 GO:0005515
Cca07g00060 648 SUPERFAMILY ARM repeat 155 609 IPR016024 -
Cca07g00060 648 Pfam Armadillo/beta-catenin-like repeat 219 258 IPR000225 GO:0005515
Cca07g00060 648 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Cca07g00060 648 Gene3D - 3 121 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00060 Cca-Chr7 826697 829331 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00060 - - gmx:100807066 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00060 07 826697 829331 Cca07g00060 07 826697 829331 ECH