Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00055 ATGCTTCAGTTAAAGGGTAGTGATGTTCAAAAAATAAATTCACATAGTTTATGCGACTTCGGTTTTGCCCATTTTGTTTTGTCCAAATTGGAGAGTGAATATGAGGCGAGGATCCGCAAAGTGAAGGCAGAAAACAAGAGTTTAAATGGCTGCTCCTGTTCCCTTGTGAATTGTGACATCATCTCCCAAAGTACAATTCCTTGTCTTCTCTCCTTCCTTCCGCTCTCGTGTTTTCTGGGACACAGTACTAACACGGGCATTTATTTATGTTTAACAATTCCTTTCACAGTTTATAACCCCTTTGTTTCTCGTCACAAGGAGAGTGACCTGTTCCAATTCCTAAGTCCAAGGATGCAAGATATCTCCTTCTATGGCCTTATACTTTTCTTCTTTCTAATAGGGGCTTCTTTGGTTTCTCCTTTATATGATGGGCCCTTGTATGACTCCACTGCCTACACTGAGTGCAAAGAGAAGCCAGAGGAGCCACTTTATGGCGGAGGAGTTTTCAAGAGTGAGAATCGTGGTGTTGAAGACAGCACTGCCTCCTATGTTGTCAACAATACCTATGTCACTTCACTCGTTCTGTGTAATCTCACTCACGGCTCCATTTACTCTTTTTCCGTATGGGTGAGAATTAAAGATTCAAGTGCAGCTGTGATAAGGGCCAGACTTGAAACAGAGAAAGAGACACATGACTGCATTGGGACAGTTTCAGCCAAACGTGGATGCTGGTCATTTCTGAAGGGTGGATTTGTTTTGGATTCGCCTTCAAACTTATCTAATATCTTCTTCCAGAGCGCGGATGGTAAAGATATCGATATAGATGTTGCTAGCGCGTCACTCCAGCCATTTACTAAGCAGCAATGGAGAATCAATCAACAGTATATAATCAATACTCATAGAAAGCGTGCCGTCACTATTCATGTGTCAGATAGTAATGGAAAGAGATTGCAAGGAGCTTCTATCTGTGTAGAGCAAATCGCAAAAGACTTCCCTATTGGATCTGCAATAGCAAAAACCATTATTGGCAACTTGCTCTATCAGAATTGGTTTGTGAAGCGGTTCAATGCAGCAGTATTTGAAAATGAGCTCAAATGGTACGCTACAGAACCTGATGAAGGCAAGGTCAATTACACCATTTCAGACCGGATGCTGCAATTTGTTAGAACAAACAATATCGTAGCCAGAGGTCACAATATATTCTGGGAAGACCCTAAATACACTCCTGCATGGGTTCTTAACCTTACTGGCATGCAGCTCCAATCTGCTGTTAATTCTCGAATACACAGTCTCATGAGCCAATACAAGGATGAGTTCATACACTGGGACGTCAGCAATGAAATGCTTCATTTTGATTTCTATGAGCAAAGGCTTGGACCAGATGCCACATTTCATTTCTTTGAGACAGCACATGAATCAGATCCATTGGCAACACTATTTATGAATGACTATAATGTTGTGGAAACGTGCAGCGATGCAAATTCCACTGTGGACGCCTATATATCACGTGTAAGAGAATTGCAACGAAATGGAATCTTTATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCCAATCCTCCTCTTATCAGAGCTATCCTAGACAAGTTGGCAACACTTGGCCTTCCTATTTGGCTTACTGAAGTTGATATAAGCAAGACACTTGATAGAGATGCACAGGCAAATTATTTGGAAGAAGTGTTGAGGGAAGGTTTCTCTCATCCTTATGTGAATGGGATAATGCTATGGACTGCTTTTCATCCAAATGGGTGTTACCAAATGTGCCTCACAGACAATAATTTTAAGAACCTCCCAGCAGGTGATATAGTGGACAAACTTCTTGAGGAGTGGCAATCTGGTCGTGTAGAGGGAGTCACTGATGGGCACGGTTCCTATAGCTTTTACGGCTTCTTAGGAGAGTATAGAATTAGTGTTAACTATGAAAACAGGACCATAAAGTCAACATTCTCCCTCTCTCGGGGTGAAGAAACTAGACATGTCACTATTACAATATGA 2019 0.417 MLQLKGSDVQKINSHSLCDFGFAHFVLSKLESEYEARIRKVKAENKSLNGCSCSLVNCDIISQSTIPCLLSFLPLSCFLGHSTNTGIYLCLTIPFTVYNPFVSRHKESDLFQFLSPRMQDISFYGLILFFFLIGASLVSPLYDGPLYDSTAYTECKEKPEEPLYGGGVFKSENRGVEDSTASYVVNNTYVTSLVLCNLTHGSIYSFSVWVRIKDSSAAVIRARLETEKETHDCIGTVSAKRGCWSFLKGGFVLDSPSNLSNIFFQSADGKDIDIDVASASLQPFTKQQWRINQQYIINTHRKRAVTIHVSDSNGKRLQGASICVEQIAKDFPIGSAIAKTIIGNLLYQNWFVKRFNAAVFENELKWYATEPDEGKVNYTISDRMLQFVRTNNIVARGHNIFWEDPKYTPAWVLNLTGMQLQSAVNSRIHSLMSQYKDEFIHWDVSNEMLHFDFYEQRLGPDATFHFFETAHESDPLATLFMNDYNVVETCSDANSTVDAYISRVRELQRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDRDAQANYLEEVLREGFSHPYVNGIMLWTAFHPNGCYQMCLTDNNFKNLPAGDIVDKLLEEWQSGRVEGVTDGHGSYSFYGFLGEYRISVNYENRTIKSTFSLSRGEETRHVTITI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00055 672 Gene3D Glycosidases 321 627 - -
Cca07g00055 672 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 318 614 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 SUPERFAMILY (Trans)glycosidases 316 622 IPR017853 -
Cca07g00055 672 Gene3D - 160 282 - -
Cca07g00055 672 PANTHER GLYCOSYL HYDROLASE 124 671 IPR044846 GO:0004553|GO:0005975
Cca07g00055 672 SMART glyco_10 364 615 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 PRINTS Glycosyl hydrolase family 10 signature 510 522 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 PRINTS Glycosyl hydrolase family 10 signature 439 450 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 PRINTS Glycosyl hydrolase family 10 signature 477 488 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 PRINTS Glycosyl hydrolase family 10 signature 395 407 IPR001000 GO:0004553|GO:0005975
Cca07g00055 672 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 124 671 - -
Cca07g00055 672 Pfam Glycosyl hydrolase family 10 326 585 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00055 Cca-Chr7 776066 781241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00055 143 672 Glycoside Hydrolase AT4G38650 64.794 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00055 - - gmx:100793558 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00055 07 776066 781241 Cca07g00055 07 776066 781241 ECH