Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00048 ATGGGTTTTTTCGGTACCATTTTTGGATTTTGTGGTTTTGGATTTGGTATTTCCATCGGTCTTGTTGTTGGATATTATCTCTTCATTTATGTTCAACCTGCTGATGTCAAGGATATTGAAATTCAACCATTGATGGAAGAAGACTCGCAAACTTTGCAACGAATGATTCCAGAGATCCCACTTTGGATAAAAAATCCCGATTTTGATAGGCTTGATTGGCTTAACAAACTTGTTGAATATATGTGGCCATACCTTAACAAGGCAATATGCAAGACTGCAGAGAATATTGCAAAACCTATAATTGCTGAACAGATACAAACATACAAAATTGAATCAGTTGAGTTTGAAGAGCTCACACTAGGGTCCTTACCACCAACTTTTCAAGGAATGAAAGTTTACGAAACTGAAGAGAAAGAGTTAATCATGGAGCCTTCTATAAAATGGGCAGGAAATCCTAATATCATTGTTGGGGTTAAGAAATTTGGGTTGAAAGCAACCGTCCAGGTGGAAGATTTGCAAGTTTTTCTAATACCTCGCATTACTTTAAAACCTTTGGTCCCAAGTTTTCCATGCTTTGCCAATATTTATGTGTCTCTTATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTAGTAGGGGCTGATCTTATGTCTATTCCCGGCCTTTATAAATTTGTTCAGGAGCTTATTAAAGATCAAGTTGCAAACATGTACTTGTGGCCTAAAACCTTGGAAATTCAAGTTATAGATCCAACAAAAGCTTTGAAGAAGCCGGTTGGAGTTTTGAATGCAAAAGTTATAAGAGCAATGAAGCTAAAAAAGAAAGATCTTCTAGGTGCATCTGATCCTTACGTAGTTCTGAAACTCATTGAGGATAATTTGGCATCCAAAAAAACTACTGTGAAGCACAAAAACTTGAATCCTGAATGGAATGAGGAATTTAGTTTGGTTGTTAAGGATCCAGAGTCTCAATCTTTAGAGCTTCGTGTCTACGACTGGatatatatatatatatatatatatatatatatatTAAAGTTTTATCTTATTGTTGGGAAGCATGATAAGATGGGTATGAATATGATCCCTTTGAAAGAGCTTGTGCCTGAAGAGTCTAAAGTTTTTACTCTTGACCTCCTAAAAAACATGGATCCTAATGATGCTCAAAATGAGAAGTCTCGTGGACAAGTTGTTTTGGAATTGACATATAAACCTTTCAAAGAAGAAGAATTAGCCAAAGGTTTAAGTTTTGACCGAGCACAATCATTAGCAAAAGCTCCTGAAGGGACTCCTCCTGGTGGAGGCTTACTTGTAGTTATAATTCATGAAGCTCAAGATGTTGAGGGAAAGTATCACACTAATCCCCATGTACGTCTTATTTTCAGAGGGGAAGAAAAAAGGACCAAGATCATGAAAAAAAATAGGGATCCAAGGTGGGAAGAAGAGTTTCAATTTTTGGTGGAAGAGCCTCCCACAAATGACAAATTACATGTGGAGGTGGTTAGCACTTCGTCAAGAAGTCTTCTACGTCAAAAGGAATCATTGGGTTACGCCGACATTAGTCTTGCGGATGTTGTTGCCAATAAAAGAATCAATGAAAGACACCATCTTATAGACTCCAAGAATGGCCGCATCCAGATAGAGATACAATGGAGAGCCTCATAA 1665 0.3718 MGFFGTIFGFCGFGFGISIGLVVGYYLFIYVQPADVKDIEIQPLMEEDSQTLQRMIPEIPLWIKNPDFDRLDWLNKLVEYMWPYLNKAICKTAENIAKPIIAEQIQTYKIESVEFEELTLGSLPPTFQGMKVYETEEKELIMEPSIKWAGNPNIIVGVKKFGLKATVQVEDLQVFLIPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYKFVQELIKDQVANMYLWPKTLEIQVIDPTKALKKPVGVLNAKVIRAMKLKKKDLLGASDPYVVLKLIEDNLASKKTTVKHKNLNPEWNEEFSLVVKDPESQSLELRVYDWIYIYIYIYIYILKFYLIVGKHDKMGMNMIPLKELVPEESKVFTLDLLKNMDPNDAQNEKSRGQVVLELTYKPFKEEELAKGLSFDRAQSLAKAPEGTPPGGGLLVVIIHEAQDVEGKYHTNPHVRLIFRGEEKRTKIMKKNRDPRWEEEFQFLVEEPPTNDKLHVEVVSTSSRSLLRQKESLGYADISLADVVANKRINERHHLIDSKNGRIQIEIQWRAS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00048 554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 552 IPR035892 -
Cca07g00048 554 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 553 IPR045050 GO:0008289
Cca07g00048 554 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 553 - -
Cca07g00048 554 Pfam C2 domain 436 534 IPR000008 -
Cca07g00048 554 Pfam C2 domain 261 371 IPR000008 -
Cca07g00048 554 PRINTS C2 domain signature 304 317 IPR000008 -
Cca07g00048 554 PRINTS C2 domain signature 277 289 IPR000008 -
Cca07g00048 554 PRINTS C2 domain signature 326 334 IPR000008 -
Cca07g00048 554 ProSiteProfiles C2 domain profile. 240 377 IPR000008 -
Cca07g00048 554 CDD C2 262 379 - -
Cca07g00048 554 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Cca07g00048 554 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cca07g00048 554 Gene3D C2 domain 436 554 IPR035892 -
Cca07g00048 554 ProSiteProfiles C2 domain profile. 418 535 IPR000008 -
Cca07g00048 554 SMART C2_3c 436 534 IPR000008 -
Cca07g00048 554 SMART C2_3c 261 376 IPR000008 -
Cca07g00048 554 Gene3D C2 domain 255 423 IPR035892 -
Cca07g00048 554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 408 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00048 Cca-Chr7 661883 671351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00048 255 533 Lipid Metabolism Gene Families AT3G61300 25.784 7.45e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00048 - - gmx:100780850 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00048 07 661883 671351 Cca07g00048 07 661883 671351 ECH