Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00047 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCATCGTCTACCACTCGTTCCGGCAAGCGTTCTCGTCTTTCTTCTTCTTCCGCTTCGATCCCAAACACCGTCGCTGTTAATACGCGTTCTCGTTCGGCCAGGACTAACAACAACTCCGCTTCTCTCATGGACCCCACCAATGAATCCTCCGGGTCTCGCCGCGATCGACGTGGCAAGAATTTGGATAGGGACAATTCAGATAAAGGGAAGGAGAAGGAACAAGATGTTAGGATTAGGGATGTGGAGCGAGAACGAGAGCGAGGGGTGCCGTTAAATATGGAGAGCGAAGGTGTTGGGgatgacgatgatgataatgatagtgaaggtggtgTGGGGATATTACCCCAGAATTTCACATCTGCTAGCAGTGCCCTTCAAGGGCTTCTTCGGAAACTCGGTGCTGGGTTGGATGATCTGCTTCCTGCTACGGCTATGGGTGGTTCTGGTTCGTCTTCTCACCAGAGTGGTAGACTAAAGAAACTTTTGTCTGGCTTGCGTGCTGATGGGGAAGAAGGTCGTCAGGTTGAGGCATTGACGCAGCTCTGTGACATGCTCTCCATTGGCACTGAAGAATCTCTTAGTACATTTTCGGTTGACTCATTTGTTCCTGTGCTGGTGGGGTTGCTTAATCACGAGAGCAATCCGGATATTATGCTTCTTGCGGCCAGAGCGCTAACCCATTTGTGTGATGTGCTTCCTTCATCCTGTGCTGCTGTTGTGCATTACGGTGCAGTGTCCATCTTCTGCGCAAGACTACTTACAATAGAGTATATGGACTTGGCGGAGCAGTCTCTTCAAGCTCTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTACGGGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCTACCGGTGTTCAGCGTGTGGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTCCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTTTTGACAAACCTCCTTCAGTACCATGACTCCAAGGTCCTGGAACATGCCTCTGTTTGTTTGACTAGAATAGCTGAAGCATTCGCATCATCTCCAGACAAATTAGATGAATTGTGTAATCACGGACTGGTAACGCAAGCTGCCTCTCTCATTTCTACCAGCAGTCCTGGAGGTGGACAGGCTTCTCTCAGCACTCCAACATATACTGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCCCCTCTCGGAGCTAAAACATTGCTCCTCCTTGGAATTAGTGGCATTCTTAAAGATATACTATCTGGTTCCAGTGTTTCTTCTAACACCTCTGTTTCCCCTGCATTGAGTAGGCCAGCAGATCAGATATTTGAGATTGTGAACCTGGCAAATGAACTTCTGCCTCCATTACCACAAGGAACCATTTCCCTTCCTGTCAGCTCGAACTTGTTTGTGAAAGGGTCTGTTGTGAAAAAATCTCCTTCTGGCAGTTCTGGAATACAAGAAGACACAAATGGAAATGTTCACGAGATATCGGCTCGTGAGAAATTATTAAATGATCAGCCTGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCTAGTGTCAATGGTCCTGTTCGCCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGCAACAAATATATCAAGTTTCTTAGCTGGCGTGTTAGCATGGAAAGATCCGCATGTTTTGGTTCCTGCCTTACAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACTTTCTCTAAGATGTTTGTCAGAGAAGGTGTGGTCCATGCAGTTGACCAACTGATTTTGGCTGGAAATTCAACCAATATATCTACACAAACATCATCTGCTGAGAAGGAGAGTGATTCTGTATCTGGAACTTCATCTCGTGCTAGGCGCTATCGCCTGCGCAGTGGTAATTCAAATAACGATGCTAGCCCTGTGGATGATTTGAAAAGTCCAGTTCCAGTAAATGTTGGTTTGCCTCCAAGTTCTGTAGAAACTCCAACATCAAATTCTAGTATCCGTGCATCCATTGGCTCCATTGCTAGGGCTTTTAAAGACAAGTACTTTCCTTCTGATTCCGGGTCTGTTGAAGTGGGAGTTAGTGATGATCTTTTGCATCTGAAAAGTCTCTGCACGAAGTTGAACACCAGTGTTGATGACCAAAGAGCTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGGACGATAATTCTACCATCACAGAAGAGTATTTGATTGGGGTGATATCTGATATGCTAAAGGAACTTGGTAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGCTGAATTATTTTTCTTGCGGATATTTTTCTAAAGATCGAATCTCAGAAACCAGTATTCCAAAGCTTCGCCAACAGGCACTTACAAGATTCAAGTCATTTGTAGCTGTTGCACTACCTTTGAGCATTGACAATGGGGCTGTTACTACTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTTATGCTAAGTAATTCATCTCGGTCATCTAGTGGAAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCATCCATTAAAGCTACGCCTCTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGATTGATCCCTTAGCAAGTTTAGCAGCCATAGAGGAATTTCTTTGGGCTCGTGTCCAGCGTAGTGAATCTGGTCAAAAGTCTACTATAGCTGCTGAAAATTCTGAATCTGGAACGACTCCTGCAGGAGCAGGTGTTTCATCCCCTTCCTCTTATACTCCATCCACTAACCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGAGATACACCTAGAAAAGAAACATCTCAAGATAAAAGCATGGGCTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAGCCTGCACAGGAGGAAGCACGAGGACCCCAAACAAGGAATGCTGTGCGTAGAAGAGCAGCTCTCGATAAAGATGCTCAAATGAAACCTGTAAATGGTGACTCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATtgatgaggctttggtgatcgaagatgatgatatttccgatgatgacgatgaagaccatgaagatGTGCTGAGGGATGATTCTCTTCCTGTATGTTCGCCTGACAAAGTACATGACGTGAAATTGGGTGACTCAGCTGAGGAGACTATTGCTCCAGCAACAAGTGATAGCCAGACTAATGCAGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGCCAGGGTATCTGACTCTGCTGATTTTAGGAGTGGGTATTCATCTAGCTCAAGGGGCGGAATGTCATTTGCTGCTGCTGCTGCTATGGCTGGACTTGGATATACTAATAGCAGAGGTTTCAGGGGAGGCAGAGATAGGCATGGGCGCCTGTTGTTTGGTAGTTCTAATGATCCTCCGAAGTTGATTTTTACTGCTGGTGGGAAACAGCTTAATAGGAATTTGACTATTTATCAGGCAATTCAAAGGCAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCTGGTGATGGAAACAGTCTTTGGGGTGATATTTACACCATCACTTATCAGAGGGCAGAAAACCTGTCAGATAAGGCCTCTACAGGAGGGTCAAATTCAATTACTTCAAAATCTGCCAAATCTGGCTCTGCCTCAAATTCTAGCTCAGAAGCTAAATTGCATCAGACATCTGTTCTAGATAGCATATTGCAGGGAGAATTGCCCTGTGATCTAGAAAAATCTAATCCCACTTACAATATTTTGGCACTCCTACGTGTGCTGGAGGGTTTGAACCAGCTTGCTCCTCGTTTGAGGGCCCAAATGGTTTCTGATAGTTTTGCTAAGGGAGAAATCTTGGATTTAGACAAGCTAGGTGTTACAACTGGTGCTAGGGTGCTTCCGGAACAATTCATAAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCACTTGCGCTATGCAGTGGTAGTCTTCCCTTATGGTGTTACCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACCCGACGACAGTACTTTTATTCTACTGCATTTGGGTTATCTCGTGCATTGAATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCAACAACTGAGAGAGAGGTGAGAGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTCGGTGAAGTTGGCACCGGCCTGGGACCCACCCTTGAGTTTTATACAATCCTTAGTCATGATTTGCAAAAAGTTGGACTGCAGATGTGGAGATCTAATTCTTCAGAGAAATATCAAATGGAAGTTGATGGAGATGAAAAGAAAATGAAAAGCAGTGAAGGCTCTGGGCCTAATTTGGCTGGAGATGGAGAACTTGTTCATGCTCCTCTGGGGCTGTTTCCTCGGCCTTGGCCTACAAATTCTGATGCATCAGAGGGTAGCCACTTTTCAAAAGTTGTTGAGTATTTCCGGCTGCTAGGTCGCGTAATGGCTAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCATTGTCAGTGGCATTTTATAAACTTGTTCTCAGTCAAGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTCTGTCGGAAGCATTATATAGAATCTACTGGTGGTAGCTATACTGATACAAGTGTTAACTTACATTTTCGTGGTGCCCCAATTGAAGAACTTTGCTTAGATTTTACACTTCCTGGTTATCCTGAATACACCTTGAAACCAGCAGATGAAATTGTTGATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCAACTGTCAAGACTGGAATCATGCGACAAATAGAAGCATTTAGAGCAGGGTTTAACCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAATTAGATAACTTGCTATGTGGCCGCAGGGAGTTGTGGGAGGCCGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACACTGCCAAGAGCCCTGCCATTGTTAATTTGCTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGACTGGCAGTTCTGAATCCAAAACTAACGATTGTGAGGAAGCTTTCATCAACTGCAGTTAATACTTCATCTAATGGGAATGGACCTTCCGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGCACAAGAAGCTACTATATGCTATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5670 0.437 METRSRKRAEASSAAPSSSSTTRSGKRSRLSSSSASIPNTVAVNTRSRSARTNNNSASLMDPTNESSGSRRDRRGKNLDRDNSDKGKEKEQDVRIRDVERERERGVPLNMESEGVGDDDDDNDSEGGVGILPQNFTSASSALQGLLRKLGAGLDDLLPATAMGGSGSSSHQSGRLKKLLSGLRADGEEGRQVEALTQLCDMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSPGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSSVSSNTSVSPALSRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKGSVVKKSPSGSSGIQEDTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSATNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNISTQTSSAEKESDSVSGTSSRARRYRLRSGNSNNDASPVDDLKSPVPVNVGLPPSSVETPTSNSSIRASIGSIARAFKDKYFPSDSGSVEVGVSDDLLHLKSLCTKLNTSVDDQRAKAKGKVKASGFGLDDNSTITEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLNYFSCGYFSKDRISETSIPKLRQQALTRFKSFVAVALPLSIDNGAVTTMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSHPLKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWARVQRSESGQKSTIAAENSESGTTPAGAGVSSPSSYTPSTNRRHSTRSRSSVNIGDTPRKETSQDKSMGSSKSKGKAVLKPAQEEARGPQTRNAVRRRAALDKDAQMKPVNGDSTSEDEELDISPVEIDEALVIEDDDISDDDDEDHEDVLRDDSLPVCSPDKVHDVKLGDSAEETIAPATSDSQTNAASGSSSKAGTARVSDSADFRSGYSSSSRGGMSFAAAAAMAGLGYTNSRGFRGGRDRHGRLLFGSSNDPPKLIFTAGGKQLNRNLTIYQAIQRQLVLDEDDDERFAGSDYVSGDGNSLWGDIYTITYQRAENLSDKASTGGSNSITSKSAKSGSASNSSSEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGLNQLAPRLRAQMVSDSFAKGEILDLDKLGVTTGARVLPEQFISGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALNRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSNSSEKYQMEVDGDEKKMKSSEGSGPNLAGDGELVHAPLGLFPRPWPTNSDASEGSHFSKVVEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLSQDLDLHDILFIDAELGKTLQELNALVCRKHYIESTGGSYTDTSVNLHFRGAPIEELCLDFTLPGYPEYTLKPADEIVDINNLEEYISLVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGRRELWEAETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMHKKLLYAINEGQGSFDLS 1889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1127 1163 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 10 65 - -
Cca07g00047 1889 SMART hect_3 1476 1889 IPR000569 GO:0004842
Cca07g00047 1889 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 43 1889 - -
Cca07g00047 1889 SMART arm_5 289 329 IPR000225 GO:0005515
Cca07g00047 1889 SMART arm_5 332 370 IPR000225 GO:0005515
Cca07g00047 1889 SMART arm_5 206 247 IPR000225 GO:0005515
Cca07g00047 1889 MobiDBLite consensus disorder prediction 650 686 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 959 1115 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 650 711 - -
Cca07g00047 1889 Pfam HECT-domain (ubiquitin-transferase) 1550 1889 IPR000569 GO:0004842
Cca07g00047 1889 SUPERFAMILY ARM repeat 174 643 IPR016024 -
Cca07g00047 1889 SUPERFAMILY Hect, E3 ligase catalytic domain 1457 1882 IPR035983 GO:0004842
Cca07g00047 1889 MobiDBLite consensus disorder prediction 66 108 - -
Cca07g00047 1889 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 43 1889 IPR045322 GO:0006511|GO:0061630
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1272 1299 - -
Cca07g00047 1889 Gene3D Hect, E3 ligase catalytic domains 1406 1651 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1066 1100 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 959 1008 - -
Cca07g00047 1889 Gene3D Hect, E3 ligase catalytic domain 1760 1887 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1040 1054 - -
Cca07g00047 1889 ProSiteProfiles HECT domain profile. 1589 1889 IPR000569 GO:0004842
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1101 1115 - -
Cca07g00047 1889 MobiDBLite consensus disorder prediction 1 128 - -
Cca07g00047 1889 Gene3D - 173 655 IPR011989 -
Cca07g00047 1889 CDD HECTc 1465 1884 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00047 Cca-Chr7 648006 659333 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00047 K10590 - gmx:100791450 3161.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00047 07 648006 659333 Cca07g00047 07 648006 659333 ECH