Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00046 ATGACAACTCGCGTCATTCTCTTCCTGGCCTTGCTTTCCATCCTCGTCGCCGCTGCTCATGCACGCGGCCACCATAAGGGTAGGCATGGCCGCCATTTGGCCGCTCAAAATGTCACTTACGATGGTAAGTCACTCTTCATCGACGGCAGGCGCGAGATACTCTTCTCCGGCTCCATCCATTACACACGAAGCACCCCACAGATATGGCCTGACCTTCTTGACAAAGCAAGACGCGGAGGTTTGAACGTGATTCAAACCTACGTGTTTTGGAACGCTCACGAGCCAGAGCAAGGACAATTCAACTTCCAAGGCAATTATGACTTGGTCAGGTTCATTAAGCTTGTTCAAGCTTATAATATGTTTGTCACACTCAGGGTTGGGCCATTCATCCAAGCAGAGTGGAACCATGGAGGACTTCCATATTGGCTTAGGGAGGTCCCAGGGATCATATTCCGCTCTGACAATGAGCCCTATAAGAATTACATGCAGGGATTCGTGACAAAGATTATACAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCTCAGATTGAGAACGAGTATAACCATATTCAACTTGCATATGAGGAGAAGGGAGACAGTTACGTCCAATGGGCTGCAAATATGGCTGTGGCACAACAAATTGGAGTTCCATGGGTCATGTGCAAGCAGAGAGATGCCCCTGATCCGGTCATCAACGCATGCAATGGAAGGCATTGTGGTGACACTTTCTCAGGCCCAAATAAGCCATACAAGCCAGAAATATGGACTGAGAACTGGACCGCTCAGTACAGGGTATATGGTGATCCACCGTCCAGGAGATCCGCAGAAGACATTGCCTTCTCAGTTGCTCGCTTCTTCTCCAAGGGTGGAAATTTGGTTAACTACTATATGTACCACGGTGGAACAAACTTTGGTAGAACAAGCTCTGCCTTTACCACAACCCGCTATTATGATGAGGCGCCTCTTGATGAGTACGGTCTCCAAAGAGAACCTAAGTGGAGTCATTTGAGGGACGTGCACAAAGCTTTGCTCCTTTGTAGAAAGGCTATCCTTGGTGGCATTCCCACTGTCCAAAAGTTGAACGAGTTTTATGAGATTAGAACCTACGAGAGGCCTGGAACTGACATGTGTGCTGCTTTCCTCACTAACAACCACACCATCGAGCCAGCCACCATTAACTTCAGAGGTGTAAACTACTATTTGCCTCCACATTCCATTAGCATCCTCCCTGATTGCAAGACCGTCGTCTTCAACACCCTAAACGTTGTTTCACAACATAACTCAAGGAACTTCGAGAAGTCACCCGCTGCAAACAATTTCCAATGGGAGATGTTTAACGAGGCCACTCCAACGACCAAGAAAATGCCCATATACCAGAATATTCCTGCTGAGCTTTACGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCTGAGCTTTACGGCTTGCTTAAGGATACCACCGATTATGCTTGGTACACCACCAGCTTCGAGTTGTGTCAAGAAGACATGCCACTGGTCCCCGGGGTGGTCCCAGTTCTTCGTGTTATGAGTCTTGGACATTCCATGGTTGCTTTTGTAAATGGAGATATCGTTGGAACTGGTCATGGAACACACGAAGAAAAATCTTTTGAGCTCGACCGACCAGTACAGCTAAGAGTTGGAACCAACTACATTTCACTCTTGGCTAGCACGGTTGGACTTCCCGACAGTGGAGCTTATATGGAACATAGGTTCGCAGGACCAAAGTCCATAACCATCCTTGGTCTCAACAAAGGACCACTTGATCTTACTGCCAACAACTGGGGTCATTCGGTTGGTCTGAAGGGTGAGGGCATGAAAGTTTTCACTGAGGAAGGAGCATTGAGGGCAAAGTGGAAGCCATTGAGTCCAGTTCCACGTCCTATCACATGGTACAAGACAAGATTCGCCACCCCAGAGGGAAATGGTCCTGTTGCCATCAGAATGACTGGTATGGGAAAAGGACTCATCTGGGTGAACGGTCAAAACATTGGTCGCCACTGGATGACATTCCTCTCTCCACTTGGACAGCCTACTCAATCAGAGTACCACATCCCAAGATCTTACCTGAACCCACTAGACAACTTGCTAGTGATATTTGAAGAGGAAGGTGTAGCTCCGAACCAGGTAGAGATCCTGAACGTGAACAGAGACACAATCTGCAGCTTCATTTCAGAGAGTGATCCTGCGAATGTGAACTCATGGGTATCAAGGAGGGGTAACTTCCATCCAATAGTGGATGTTGTGGGACCAGCAGCGACACTGGAGTGTGAAACAGGGAAAAAGATTGTGGCTGTGGAGTTTGCAAGCTTTGGAAACCCCACTGGAAACTGTGGAGGCTACTCTTTGGGaagctgcaatgctgctgcaacacagcaaatcgtggagcagcaatgttTGGGGCAACCAACTTGCACGGTTGCATTGAACCGCGCAGTGTTCAACCAGAATGGCGCGGATCTTTGTCCGGATCTCCTGGTGAAGGACCTCGCTATCCAAGCTAGGTGTTCCTGA 2571 0.4687 MTTRVILFLALLSILVAAAHARGHHKGRHGRHLAAQNVTYDGKSLFIDGRREILFSGSIHYTRSTPQIWPDLLDKARRGGLNVIQTYVFWNAHEPEQGQFNFQGNYDLVRFIKLVQAYNMFVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSDNEPYKNYMQGFVTKIIQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDSYVQWAANMAVAQQIGVPWVMCKQRDAPDPVINACNGRHCGDTFSGPNKPYKPEIWTENWTAQYRVYGDPPSRRSAEDIAFSVARFFSKGGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKALLLCRKAILGGIPTVQKLNEFYEIRTYERPGTDMCAAFLTNNHTIEPATINFRGVNYYLPPHSISILPDCKTVVFNTLNVVSQHNSRNFEKSPAANNFQWEMFNEATPTTKKMPIYQNIPAELYGXXXXXXXXXXXXXPAELYGLLKDTTDYAWYTTSFELCQEDMPLVPGVVPVLRVMSLGHSMVAFVNGDIVGTGHGTHEEKSFELDRPVQLRVGTNYISLLASTVGLPDSGAYMEHRFAGPKSITILGLNKGPLDLTANNWGHSVGLKGEGMKVFTEEGALRAKWKPLSPVPRPITWYKTRFATPEGNGPVAIRMTGMGKGLIWVNGQNIGRHWMTFLSPLGQPTQSEYHIPRSYLNPLDNLLVIFEEEGVAPNQVEILNVNRDTICSFISESDPANVNSWVSRRGNFHPIVDVVGPAATLECETGKKIVAVEFASFGNPTGNCGGYSLGSCNAAATQQIVEQQCLGQPTCTVALNRAVFNQNGADLCPDLLVKDLAIQARCS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00046 856 Gene3D - 768 856 IPR043159 -
Cca07g00046 856 Gene3D Glycosidases 34 353 - -
Cca07g00046 856 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 183 195 IPR019801 GO:0004553|GO:0005975
Cca07g00046 856 Gene3D - 623 741 - -
Cca07g00046 856 Pfam Beta-sandwich domain in beta galactosidase 360 430 IPR041392 -
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 318 334 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 646 660 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 262 277 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 124 143 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 69 87 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 299 314 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 48 65 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 181 196 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PRINTS Glycosyl hydrolase family 35 signature 673 689 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PANTHER BETA-GALACTOSIDASE RELATED 8 475 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 PANTHER BETA-GALACTOSIDASE RELATED 486 844 IPR001944 GO:0004553|GO:0005975
Cca07g00046 856 SUPERFAMILY Galactose-binding domain-like 414 594 IPR008979 -
Cca07g00046 856 Pfam Glycosyl hydrolases family 35 44 350 IPR031330 -
Cca07g00046 856 SUPERFAMILY (Trans)glycosidases 36 354 IPR017853 -
Cca07g00046 856 ProSiteProfiles SUEL-type lectin domain profile. 769 856 IPR000922 GO:0030246
Cca07g00046 856 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 486 844 - -
Cca07g00046 856 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 8 475 - -
Cca07g00046 856 SUPERFAMILY Galactose-binding domain-like 611 760 IPR008979 -
Cca07g00046 856 Pfam Galactose binding lectin domain 774 855 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00046 Cca-Chr7 636485 640079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00046 38 855 Glycoside Hydrolase AT2G16730 56.760 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00046 - - ccaj:109817195 1701.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00046 07 636485 640079 Cca07g00046 07 636485 640079 ECH