Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00043 ATGGCCATCGAAGCACAGTTGTATCCCAACAACTCCCGTTTCCCATTTAGTGGATCAAAGAATTTAATGATAAACAATATTCAGTCATGTTTGAATTCTCAAGTGTATAGTCCGAAGCATCATCAACATCTACACCATGCCAGGCAGATGAATCCAAACATGTCTCTTGTTGATCCGTCTTTCCCTAATTCGAATGGCCAGCAGAACGTGAACCCCTTCAATAACTATACTTACAACCCTCAAACTTTAGCCTCATATCCTCAAGGCTTCTCTGTTGACTTTGATGAACAGAGGGAGATTGATCACTATATCAGATCACAGAATGAAAAGTTGAGAATTTTGTTGGAGGAACAAAGAAAACAGCAGGTGGAAGAGTTATTGAGGAAGGTGGAATTGAACGCTCGTTATTTAATGAGGCAGAAAGATGAAGAAATAGCGCAAGCAACAAAGAAAACGTCTGAATTGAATGAATTTTTGAGGAAGTTGGAGGTAGAGAACCAATCATGGCGAAGGGTGGCTCAGGAAAACGAGGCTATGGTGATGTCTCTTCATAATAGCTTAGAACAGATGAAAGAGAGAGCAGTGTATGGGGTGACAACAGAAGATGCAGAGTCGTGTTGCGATGACAACATGGGAATCACGGCAAAGGAAGAAGGAACAGGGGAAAACAGAGTGTGTCCTGGTGGGGCAGTAGAGGTTGAACAAATTAGGAAAAGGACAATGAATTGCAAATGTTGTAATTCTCAGAAATCGTGTTTTATGTTTCTTCCTTGCAGGCACCTTTGTTCGTGTAAAACTTGTGAGTCTTTTCTCCAAGTTTGTCCTGTTTGTAATGTGCCCAAAAAGTCCAGCATAGAAACTTTAATCCTATAG 873 0.4089 MAIEAQLYPNNSRFPFSGSKNLMINNIQSCLNSQVYSPKHHQHLHHARQMNPNMSLVDPSFPNSNGQQNVNPFNNYTYNPQTLASYPQGFSVDFDEQREIDHYIRSQNEKLRILLEEQRKQQVEELLRKVELNARYLMRQKDEEIAQATKKTSELNEFLRKLEVENQSWRRVAQENEAMVMSLHNSLEQMKERAVYGVTTEDAESCCDDNMGITAKEEGTGENRVCPGGAVEVEQIRKRTMNCKCCNSQKSCFMFLPCRHLCSCKTCESFLQVCPVCNVPKKSSIETLIL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00043 290 Coils Coil 145 193 - -
Cca07g00043 290 Coils Coil 113 140 - -
Cca07g00043 290 Pfam Zinc finger, C3HC4 type (RING finger) 241 282 - -
Cca07g00043 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 288 IPR013083 -
Cca07g00043 290 PIRSF SBP1_RNase_bind 4 290 IPR017066 -
Cca07g00043 290 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 289 IPR017066 -
Cca07g00043 290 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00043 Cca-Chr7 594388 595654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00043 K19042 - gmx:100815248 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00043 07 594388 595654 Cca07g00043 07 594388 595654 ECH