Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00019 ATGGAAGGGTTGGCGGTTCCAGTTGCACAATCGTTTCCAAAGCCAAAGGTTGGCGTTGCCGCCATTCTCACACCTTGTAATAACAGGAACAATGGGTTTGTCTCACTCAAACCACACCGTGGACGCGCCTTTCGTTTCCGCACTTCATTGTGTTCACAGGCAAAGGCGCAAGTGGCAGCCCCAGTCACCGAGAAGGATAATCCTAATTGTGTGAGTGGGAATTCCATACGGCAGAGATTTCTGAACTTTTACGCTTCCCGTGGTCACAAGCTTCTTCCCAGTGCTTCTCTCGTTCCAGATGATCCCACTGTTTTACTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTGCCTTGTGCTGCTACTGCTCAAAGGTGCATCCGTACTAATGACATCCACAATGTTGGCCTTACTGCCAGACATCAGACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAGACAAGCTATTCTATGGGCATGGGAGCTTTCCACCGCTGAGTTTGGTTTGCCACCAGACAGATTGTGGGTTAGTGTTTATGAAGATGATGATGAGGCTTTTCAGCTATGGTCTCAGGAGGTCGGGGTCCCGGTCCAGCGAATAAAGAGGTTGGGAGAAGAGGACAACTTCTGGACCAGTGGAGTAACAGGTCCCTGTGGTCCTTGCTCGGAAATTTATTATGATTTCCATCCTGAGAGGGGATATGTAGACGCCGATCTCAACGATGATACAAGGTTTATAGAATTCTATAACTTAGTATTCATGCAATACAACAAAAAAGATGATGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGTATGGCTCGCATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAATTAGCAAATGTTTCGTATGGCATTGCTGATGATCAGACGAAGAGGAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGCTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGCGATGGTAGGGGAGACCTTGAAGGAGCATTTTTACCAATTATTGCTGAGAAGGTAGTGGAGTTAAGTACACATATTGATGCTGATGTGAAGAACAAAGCACCTCGCATCTTTGAGGAGTTGAAGAGAGAAGAGCTTCGATTTGTGCAGACACTGGAGAGGGGAGAAAAGTTGCTGGAGGAGAAACTTGCTGATGCTATATCAAGTGCAGAAAGAAATGGAACTGTGCCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTATATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAGCGTGGTGTGAGTATTGATATGGTTGGTTTTGATATTGAGATGGAGAGGCAAAGGCGTCAATCGCAAGCTGCCCACAATACTGTCAAACTTGACATTGCAAATGGGGATAATATTGCAGAGGATGTACCTGACACTGAATTTATCGGATATGACAGCCTTCATTGTAAAGCAATGATAGAAAGCCTAATAGTAAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAAACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGAGAATCAACCAATAGCTGTTGTGGAGGTACTCGATGTTCAGAAATCTTTAGGCAACATATTTGTTCACAAGGGCACAGTCCAAAAGGGTGTTGTGGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGACGTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAAGTTATTGGTCAGGAGACCTCGCAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTTCACCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAGTGCTAATCAACGGATGGATTGAAGATGCAACACTACTTCGAACCAAAGTGATGCCTCTGGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAACACTTCTGAAATTCGTGGTTTTAAAATAATCTCAGAACAGGGAATTGCATCTGGAATCAGGCGCATTGAAGCTGTAGCTGGGGATGCTTTCATTGAATATATCAGTGCCCGAGACTTTTATCTGAAGCAGCTATGTTCAACTCTCAAAGTTAAACCAGAAGAACTGACAACAAGGATAGAAAACCTTCTAGAGGAGTTGAGGGAAGCTAGAAATGAAAATTCTGCTGTGCGTGCAAAAGCAGCAATCTATAAAGCTTCAGTCATTGCAAACAAAGCATTGTTGGTGGGGAATTCAAAACAGTTCAGGGTACTAGTTGAGTGCTTGGATGATGTTGATGCTGAGTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGATCATGTCCAGGTGAAGGAAAGGTTAGTCTAGTAGCTGCTTTTACTGCAGGGGTGGTTGATCAAGGAATTCAGGCAGGTAAGTTTATTGGAAAAATAGCCAAATTATGTGGTGGTGGAGGAGGTGGGAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAATCCTGAAAATTTGGCAAGTGCCCTCGATAAGGCTCGGTCAGAGCTTTTAGCTAAGCTTTGTGAAAAAGGAAATTGA 2913 0.4394 MEGLAVPVAQSFPKPKVGVAAILTPCNNRNNGFVSLKPHRGRAFRFRTSLCSQAKAQVAAPVTEKDNPNCVSGNSIRQRFLNFYASRGHKLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGDYFKRQAILWAWELSTAEFGLPPDRLWVSVYEDDDEAFQLWSQEVGVPVQRIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLADAISSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMVGFDIEMERQRRQSQAAHNTVKLDIANGDNIAEDVPDTEFIGYDSLHCKAMIESLIVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPIAVVEVLDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEVLINGWIEDATLLRTKVMPLADAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGDAFIEYISARDFYLKQLCSTLKVKPEELTTRIENLLEELREARNENSAVRAKAAIYKASVIANKALLVGNSKQFRVLVECLDDVDAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFTAGVVDQGIQAGKFIGKIAKLCGGGGGGRPNFAQAGGRNPENLASALDKARSELLAKLCEKGN 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00019 970 SMART tRNA_SAD_4 737 780 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca07g00019 970 CDD AlaRS_core 74 303 - -
Cca07g00019 970 TIGRFAM alaS: alanine--tRNA ligase 76 944 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 72 960 - -
Cca07g00019 970 SUPERFAMILY Class II aaRS and biotin synthetases 72 307 IPR045864 -
Cca07g00019 970 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 516 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Cca07g00019 970 Gene3D - 557 636 - -
Cca07g00019 970 Gene3D - 853 961 - -
Cca07g00019 970 Gene3D - 784 845 - -
Cca07g00019 970 PRINTS Alanyl-tRNA synthetase signature 139 150 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 PRINTS Alanyl-tRNA synthetase signature 339 355 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 PRINTS Alanyl-tRNA synthetase signature 363 376 IPR002318 GO:0000166|GO:0005737
Cca07g00019 970 Pfam tRNA synthetases class II (A) 76 638 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Cca07g00019 970 PANTHER ALANYL-TRNA SYNTHETASE 72 960 - -
Cca07g00019 970 SUPERFAMILY Translation proteins 531 636 IPR009000 -
Cca07g00019 970 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 737 780 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca07g00019 970 SUPERFAMILY ThrRS/AlaRS common domain 636 793 IPR018163 GO:0000166
Cca07g00019 970 Hamap Probable alanine--tRNA ligase, chloroplastic. 63 967 IPR027522 GO:0009507
Cca07g00019 970 Hamap Alanine--tRNA ligase [alaS]. 72 965 IPR023033 GO:0004813
Cca07g00019 970 Pfam DHHA1 domain 817 959 IPR003156 GO:0003676
Cca07g00019 970 Gene3D Bira Bifunctional Protein; Domain 2 71 304 IPR045864 -
Cca07g00019 970 Coils Coil 809 836 - -
Cca07g00019 970 Gene3D - 647 782 - -
Cca07g00019 970 Gene3D - 708 761 - -
Cca07g00019 970 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 71 793 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00019 Cca-Chr7 308001 314433 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00019 K01872 - gmx:100817906 1660.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00019 07 308001 314433 Cca07g00019 07 308001 314433 ECH