Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00018 ATGGAAATGAGGATAGTGTTATGCGTACTGACCTTGTCTGTGGTGGGAAGCTGGGCAGAGCAATGTGGAAGGCAAGCAGGGGGTGCTCTGTGCCCCGGTGGTCTCTGCTGCAGCCAATTCGGGTGGTGTGGCTCCACCCCTGACTACTGCGGGAAAGATTGCCAAAGTCAATGCGGTGGTACTCCTTCTCCCGGTGGTGGTGACCTTCCTAGCATCATCTCCAGGAACACCTTCGACCAGATGCTCAAACATCGCAATGACGGAAACTGCCAAGGGCATGGCTTCTACTCCTACGACGCATTCATCGCCGCCGCCAAGGCGTTCCCAGCCTTTGGAACCACCGGAGACACGGCCACACGCAAGAGAGAAATCGCCGCTTTCTTTGGCCAAACATCGCACGAAACAACCGGAGGGTGGGCCACCGCACCTGACGGACCCTACGCATGGGGATACTGCTTCCTTCGGGAACAAAACCCTAGCGCATACTGCTCCCCCTCCGCACAATACCCTTGCGCTCCAGGGAAGCAATACTACGGTAGAGGACCCATCCAAATCTCATGGAACTACAACTACGGACAGTGCGGAAATGCAATCGGCGTCGACTTGCTCAACAACCCTGACCTAGTCGCCACTGACGCCGTCATCTCCTTCAAGACTGCCATCTGGTTCTGGATGACGCCGCAGTCGCCCAAGCCTTCCTCCCACGACGTCATCACCGGTCGGTGGACTCCCTCCGCCGCCGATCAGTCCGCCGGCCGCCTCCCCGGCTACGGCACTGTGACGAACATCATCAACGGCGGCCTCGAGTGCGGCAGAGGCCAGGATGGCAGGGTGCAGGATCGCATCGGCTTTTACAAGAGATACTGTGACTTGCTCGGAGTTGGTTACGGCAATAACCTGGATTGCTTCTCGCAGAGGCCATTTGGCAATTCCCTTCTCCTCGACGCTGCCATCTAA 957 0.5789 MEMRIVLCVLTLSVVGSWAEQCGRQAGGALCPGGLCCSQFGWCGSTPDYCGKDCQSQCGGTPSPGGGDLPSIISRNTFDQMLKHRNDGNCQGHGFYSYDAFIAAAKAFPAFGTTGDTATRKREIAAFFGQTSHETTGGWATAPDGPYAWGYCFLREQNPSAYCSPSAQYPCAPGKQYYGRGPIQISWNYNYGQCGNAIGVDLLNNPDLVATDAVISFKTAIWFWMTPQSPKPSSHDVITGRWTPSAADQSAGRLPGYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDLLGVGYGNNLDCFSQRPFGNSLLLDAAI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00018 318 Pfam Chitinase class I 72 302 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca07g00018 318 SUPERFAMILY Lysozyme-like 69 309 IPR023346 -
Cca07g00018 318 ProSitePatterns Chitinases family 19 signature 2. 215 225 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca07g00018 318 CDD chitinase_GH19 73 302 - -
Cca07g00018 318 Gene3D - 72 302 - -
Cca07g00018 318 ProSiteProfiles Chitin-binding type-1 domain profile. 19 60 IPR001002 GO:0008061
Cca07g00018 318 SUPERFAMILY Plant lectins/antimicrobial peptides 21 62 IPR036861 GO:0008061
Cca07g00018 318 Pfam Chitin recognition protein 21 58 IPR001002 GO:0008061
Cca07g00018 318 PANTHER CHITINASE-RELATED 4 308 - -
Cca07g00018 318 PRINTS Chitin-binding domain signature 29 37 IPR001002 GO:0008061
Cca07g00018 318 PRINTS Chitin-binding domain signature 37 44 IPR001002 GO:0008061
Cca07g00018 318 PRINTS Chitin-binding domain signature 44 51 IPR001002 GO:0008061
Cca07g00018 318 PANTHER CHITINASE (CLASS IB) / HEVEIN 4 308 - -
Cca07g00018 318 ProSitePatterns Chitin recognition or binding domain signature. 31 50 IPR018371 GO:0008061
Cca07g00018 318 Gene3D Endochitinase, domain 2 155 211 - -
Cca07g00018 318 SMART ChitinBD_3 21 58 IPR001002 GO:0008061
Cca07g00018 318 ProSitePatterns Chitinases family 19 signature 1. 90 112 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca07g00018 318 CDD ChtBD1_GH19_hevein 20 59 - -
Cca07g00018 318 Gene3D - 19 61 IPR036861 GO:0008061
Cca07g00018 318 PIRSF Endochitinase 1 309 IPR016283 GO:0004568|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00018 Cca-Chr7 302518 304133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00018 19 318 Glycoside Hydrolase AT3G12500 73.684 6.94e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00018 K20547 - rcu:8282410 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00018 07 302518 304133 Cca07g00018 07 302518 304133 ECH