Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00006 ATGGATACCGGCGGCAATTCTTTACCATCTGCACCTGACGGGGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCACATCGTATACGGATGACACATGCTCTTCTAGCCCATTATGGACTGCTTCAGCACATGCAAGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGTTTTCACGCTGATGATTATGTTGCATTCCTTCGGAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGCCAAACTTATGCTGGGGGTTCAGTTGGGGGTGCTGTCAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTCGCAATCTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATTCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACCGAGTCATGACTGTTTCTTTCCATAAATTTGGGGACTATTTTCCTGGTACGGGGGACGTACGTGATATTGGATATGGAAAAGGAAAATACTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTGGTTCTCCAGTGTGGTGCTGATTCTTTATCTGGAGACCGATTGGGATGCTTTAATCTTTCAATCAGGGGTCATGCAGAGTGTGTCAGATACATGAGATCATTCAATGTGCCTCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGATGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAGCACGAGTATTATGAATATTTTGGTCCGGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCATCATTTACTTGAAGAAATTCGATCTAAGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCAAGTGTCCAATTTCAGGAAAGGCCTCCTGATTCTGATCTTGGAGAGGCAGATGAAGATCATGATGATGGAGATGAGGCATGGGATCCAGATTCGGACATGGACATTGATGCTGAACGTGAGCTTGTCTCTAGCAAAGTAAAGAAAGAAATTGCTGAACCTCAGCTGAATGATCTGGAGGACCAGAGAAGTGGAGAGCATTTGAGAGGCTCTGATACTGCAATTGCTGAAACTTGCATGAAGGCTCTAGATATTTCCTCTCAACAAGCTGATGAAGATAATGTGAAAATTGAACATACTGTGAATGATTTGGCCAGAGAGAAGGACCTGAAGTGTTAA 1491 0.4353 MDTGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEIRSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDEAWDPDSDMDIDAERELVSSKVKKEIAEPQLNDLEDQRSGEHLRGSDTAIAETCMKALDISSQQADEDNVKIEHTVNDLAREKDLKC 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00006 496 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Cca07g00006 496 MobiDBLite consensus disorder prediction 383 417 - -
Cca07g00006 496 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Cca07g00006 496 PANTHER HISTONE DEACETYLASE 19 3 486 - -
Cca07g00006 496 MobiDBLite consensus disorder prediction 400 417 - -
Cca07g00006 496 PIRSF HDAC_I_euk 5 475 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cca07g00006 496 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cca07g00006 496 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cca07g00006 496 Pfam Histone deacetylase domain 36 324 IPR023801 -
Cca07g00006 496 PANTHER HISTONE DEACETYLASE 3 486 - -
Cca07g00006 496 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cca07g00006 496 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00006 Cca-Chr7 120771 139628 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00006 K06067 - gmx:100795375 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00006 07 120771 139628 Cca07g00006 07 120771 139628 ECH