Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02054 ATGTTTGGAGCGTTGAGGAGTGGTGAGTTGTTGAACAAATGGCTGACTCTGCCTCCCGTTACAAGCACTGCGACTATGGaggtgaaggcgaaggtgaaggcgaaggcgatggcgttggcgttggcgttggggaaAGAAAATCAAATCTCCTCCACTCCCACCACTGCTCTCAAATGGGTTGTTCGCTGCTGCCCAAACCTGCCCAGAGCCCTTGTGCACAAGCTTTTCCGTCTAAGACAAGTTCGAATTCTCTCTCCTTCTTCTCACTCTCACCATCCAACATTCAAAAGGGTCGCAGCTAAGGACACCTTGAACACTGGTGATCGGATCTTACTTCCTCAATCCGTTAAACAAACGCCTACCCACAAACATCACTCTCATCTCACTTCCCAACAAATCAACTTTATTCGCACTCTTGTTATCTATAAGGATCCTGCAATCCTCGTTCTCAACAAGCCTCCGGGAATGCCAGTGCAGGGTGGCATTAATATCAAACGGAGTTTAGATGTAGTGGCTGCTTCGAGTTTAAATTATGAATACTCTGAACCCCCTCGTCTGGTGCATAGACTTGACAGAGACTGTTCTGGCATTCTGGTCATGGGAAGGACACAGGCAAGTGCTACACTCCTGCATTCCATCTTCCGGGAGAAAACTTCCAGGGCGTTAAATGATATTGGAAAAGAGAAGAGAATCCTACAAAGAAAGTACTGGGCTCTGGTCCTTGGATGTCCTAGACGTCCAAAGGGGTTGGTCACTGCTTCACTGGGTAAGGTGGTGGTTGACAATGGGAGATCTGATCGAATAACTATTGTTGACAATTCTACAATAATGTCATCACAACATGCAATTACAGAGTACCGAGTGATTGCATCATCATCTCAAGGTTATACATGGTTGGAGCTGTCTCCTTTAACTGGTAGAAAACACCAGCTTCGGGTCCACTGTGCCGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGACATTTTGATTTGTCTAATGTGGACGACTCACGTGAAGAAGAGCTTCTCAAGGAAGAAACACTCCCCTTTGGCCTTAATTTGAAGAAAGGGAGCATCTCTGAGAATCATCCTCGTTTACATCTTCATTGCAAGCAGATAGTCTTGCCCAATATATCTCAAGCTCTGCAAAATGTGCAATCAGCTTCCAATTGTGATCTTTCACTAGTGGAAGGACTTGAATTGGCCGCGGATTTGCCTCCATACATGCAAAGAAGTTGGGATGTCACAAATTGA 1287 0.4367 MFGALRSGELLNKWLTLPPVTSTATMEVKAKVKAKAMALALALGKENQISSTPTTALKWVVRCCPNLPRALVHKLFRLRQVRILSPSSHSHHPTFKRVAAKDTLNTGDRILLPQSVKQTPTHKHHSHLTSQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDVVAASSLNYEYSEPPRLVHRLDRDCSGILVMGRTQASATLLHSIFREKTSRALNDIGKEKRILQRKYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTIMSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNVDDSREEELLKEETLPFGLNLKKGSISENHPRLHLHCKQIVLPNISQALQNVQSASNCDLSLVEGLELAADLPPYMQRSWDVTN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02054 428 Pfam RNA pseudouridylate synthase 147 316 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca06g02054 428 CDD PseudoU_synth_RluA_like 147 338 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca06g02054 428 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 40 426 - -
Cca06g02054 428 SUPERFAMILY Pseudouridine synthase 135 388 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca06g02054 428 Gene3D Pseudouridine synthase 130 399 - -
Cca06g02054 428 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 40 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02054 Cca-Chr6 35772241 35775514 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02054 - - gmx:100779473 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02054 06 35772241 35775514 Cca06g02054 06 35772241 35775514 ECH