Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02052 ATGGCGTTTTCAGAGTTCCGTAGACTGGACGAGAGGTCGGTGATAGAGTACGTAAAGGGCGTCCCTGCCCTGGCGTCGAAGCTGCAGCTggctgaggctgaggctgaggctgatgctgatgctgaTCATAACATAACCGTCAAAGAGATCGGAGATGGTAACCTCAACTTTGTGTTCATCGTCGTCAACTCTGCGTCTAAGGCTTCCATTATCATCAAGCAGGCTCTGCCCTACATTCGTTGCATAGGGGAATCGTGGCCTCTGACAAAGGACAGAGCATACTTTGAGGCCACGGCGCTGGAGGAGCAGGGTCGCCTGGCCCCAAACCATGTCCCACAAGTTTATCATTTCGACCTTACCATGTCCTTAATCGCCATGCGCTACCTGGAACCTCCCCACATCATACTCCGAAAAGGCCTCATTGCTGGAATTCAGTATCCACTCCTCGCACCCCACATGGCACATTTCATGGCCAACACTCTCTTCTTTACTTCTCTCCTCTTCCGCTCCACACTAGACCACAAAAGGGAAGTTGCCAAATTTTGTGGGAATGCCGCCATGTGCAGGCACACCCAGCAGGTTGTTTTCTCCGACCCTTTTCAAGTTTCTCAATACAATCATTGGTCCTCTCCTTATCTTGATCCTGATGCCGAGGCTCTTCTTCAAGACAATCTCCTCAAACTTGAAGTTGCTCACCTCAAATCTATCTTCTCTGAGAGGGCCCAGGCACTGATACATGGAGATCTACATACTAGTTCTGTCATGGTTACTCCTCAATCAACCCAAATCATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGACATTGGTGCATTCTTGGGGAACCTCATCTTGGCTTTCTTTGCTCAGGACGGGCTTCTGGATCAATCTAATGATCGAAAAGCATACAAGGAGTGGATTCTTCAGACAATTGAAGACACTTGGAATCTTTTTTACGAAAAATTCATTGCACTTTGGGATGAACACAGAAATGGTGCTGGTGAGGCATATCTTCCGGCAATTTATAACGATCCTGAGGTCCTGCTTCTGGCGCAGAGGAGATACATGTCAGATTTGTTTCATGACAGTCTTGGATTTGGTGCTGCCAAAATGATAAGGAGAATCGTTGGTGTGGCTCATGTTGAGGATTTTGAATCCATTACCGATGCTGCTAAACGGGCTACCTGTGAACGGAAGGCACTTAATTTGGCTAAGATGCTTCTCAAAGATAGAAGAAAGTTTGAAGGCATTGCCGAAATTGTTTCAGCTATTCGGCAATTCTAG 1290 0.4535 MAFSEFRRLDERSVIEYVKGVPALASKLQLAEAEAEADADADHNITVKEIGDGNLNFVFIVVNSASKASIIIKQALPYIRCIGESWPLTKDRAYFEATALEEQGRLAPNHVPQVYHFDLTMSLIAMRYLEPPHIILRKGLIAGIQYPLLAPHMAHFMANTLFFTSLLFRSTLDHKREVAKFCGNAAMCRHTQQVVFSDPFQVSQYNHWSSPYLDPDAEALLQDNLLKLEVAHLKSIFSERAQALIHGDLHTSSVMVTPQSTQIIDPEFAFYGPMGFDIGAFLGNLILAFFAQDGLLDQSNDRKAYKEWILQTIEDTWNLFYEKFIALWDEHRNGAGEAYLPAIYNDPEVLLLAQRRYMSDLFHDSLGFGAAKMIRRIVGVAHVEDFESITDAAKRATCERKALNLAKMLLKDRRKFEGIAEIVSAIRQF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02052 429 PANTHER METHYLTHIORIBOSE KINASE 2 428 - -
Cca06g02052 429 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Cca06g02052 429 SUPERFAMILY Protein kinase-like (PK-like) 42 428 IPR011009 -
Cca06g02052 429 PANTHER METHYLTHIORIBOSE KINASE 2 428 - -
Cca06g02052 429 TIGRFAM MTRK: S-methyl-5-thioribose kinase 48 424 IPR009212 GO:0009086|GO:0046522
Cca06g02052 429 Pfam Phosphotransferase enzyme family 47 282 IPR002575 -
Cca06g02052 429 Gene3D - 133 429 - -
Cca06g02052 429 PIRSF MTRK 1 429 IPR009212 GO:0009086|GO:0046522
Cca06g02052 429 Gene3D Phosphorylase Kinase; domain 1 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02052 Cca-Chr6 35762125 35765231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02052 K00899 - gmx:100818359 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02052 06 35762125 35765231 Cca06g02052 06 35762125 35765231 ECH