Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02049 ATGGCTCTGTCTTTTGGTCTCTTCTCTTCCATTCTCCCACCAGAAACCACTTTGAGGGCTCCTACTGCTTCTCTTTCTCCTCATGGCTTGCGCATGCTGCGAACCGTTACCTTTGCCACCATCTCTCAGTCTGACCCACCCACTCGCAAAATCCGCGGTATCATGAAACCCCGCAAGGTGTCCCCTGAGATGGAAGCCCTTGTCGGCGTTCCCGAGATTTCTCGAACCCAAGCTCTCAAACAGATTTGGGCATACATTAAGGACAACAATCTTCAGGATCCTGAAAACAAGAGGACTATAAATTGTGATGAGAAGCTGAAGAAGGTGTTTGCAGGGAGAGATCAAGTTGGTATGCTAGAGATTGCTGGTTTGATTAGCCCACATTTCCTTAAAAGTGAAAGTTAA 405 0.4741 MALSFGLFSSILPPETTLRAPTASLSPHGLRMLRTVTFATISQSDPPTRKIRGIMKPRKVSPEMEALVGVPEISRTQALKQIWAYIKDNNLQDPENKRTINCDEKLKKVFAGRDQVGMLEIAGLISPHFLKSES 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02049 134 CDD SWIB-MDM2_like 58 129 - -
Cca06g02049 134 Gene3D SWIB/MDM2 domain 49 134 IPR036885 -
Cca06g02049 134 SUPERFAMILY SWIB/MDM2 domain 50 132 IPR036885 -
Cca06g02049 134 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 21 130 - -
Cca06g02049 134 ProSiteProfiles SWIB/MDM2 domain profile. 53 131 IPR003121 -
Cca06g02049 134 Pfam SWIB/MDM2 domain 56 129 IPR003121 -
Cca06g02049 134 SMART swib_2 54 134 IPR019835 -
Cca06g02049 134 PANTHER EXPRESSED PROTEIN-RELATED 21 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02049 Cca-Chr6 35697281 35698826 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca06g02049 SWIB 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02049 - - gmx:100306198 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02049 06 35697281 35698826 Cca06g02049 06 35697281 35698826 ECH