Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02045 ATGGCTTCGTCTTCTTCAGTGCCGGAAGGTTTAGGTTTAAGTGAAGAAGATGGCTCTGAATCGGGATGGGTGGCTGCTAGAACTTCCTGCGACCACCTGGGCGCCTTATCCGACGATCTGAGTCACATTCCGACTCCTGGCACTCACTGCAACACGTGCCAACACCCCACCGAAAACTGGTTGTGCCTTTCGTGTAAGCAGGTTCTGTGCAGCCGTTTTGTGAACAAGCACATGCTCCACCACTTTCACCTCACTAACGCAAATCATAGCGTTGCCCTCAGTTTTAGTGATCTCTCCGTCTGGTGTTTCTCCTGCGACGCCTACTTGGATGCTCAACTCATTCCCCAACTGCGTCCTGTTTATCAACTAGCCTATATACTGAAATTTGGTGAGCCTCCACCACTCCTCCCATCAGATCAGCATCACCTTCCATCTGCAACTTCAGTTTAG 450 0.5067 MASSSSVPEGLGLSEEDGSESGWVAARTSCDHLGALSDDLSHIPTPGTHCNTCQHPTENWLCLSCKQVLCSRFVNKHMLHHFHLTNANHSVALSFSDLSVWCFSCDAYLDAQLIPQLRPVYQLAYILKFGEPPPLLPSDQHHLPSATSV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02045 149 ProSiteProfiles Zinc finger UBP-type profile. 28 130 IPR001607 GO:0008270
Cca06g02045 149 SUPERFAMILY RING/U-box 28 122 - -
Cca06g02045 149 SMART Zf_UBP_1 49 100 IPR001607 GO:0008270
Cca06g02045 149 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 11 135 - -
Cca06g02045 149 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g02045 149 Pfam Zn-finger in ubiquitin-hydrolases and other protein 50 110 IPR001607 GO:0008270
Cca06g02045 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02045 Cca-Chr6 35671508 35672859 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02045 - - var:108319921 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02045 06 35671508 35672859 Cca06g02045 06 35671508 35672859 ECH