Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02039 ATGGGAATCCGATCGGTGTTTGATGGCGGCGAAGTGAGAAAGGAATTGGAGAAGCGTGGAATTGACAGAAAATTCATTCCAATGATATGGAAGCGTGTGGTtgcgaatgcgagtgcgaatgcgagtgcgaatgcgaatacgaaGGATTGGGACTGGGAGAAAGAGGTTCCGTCGTTGCCTTGTTCAGCCTACTCTGTCCTTGCTTCCCACTTCAAAACCCCTCTCTCTTCCTCTCTTCACTCCGTTTTCCACTCTGCCGACAACTTCACCTCGAAGCTCCTCATCAGGCTCCGAAATGGAGCATTCGTGGAGGCTGTCATAATGAGATACGATACTCGTTTGGGCAAATATGGTGGCAAACCCCGCCCCGGTGGTCTCAGAGCAACTTTGTGTATTTCATCTCAGGTTGGATGCAAAATGGGTTGCAACTTCTGTGCCACTGGATCCATGGGATTCAAAAATAACTTATCATCAGGAGAAATTCTCGAACAGCTCGTTCATGCCTCTTCTTTCTCTCAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTGAACAACTATTCTGCTGTAGTAGAAGCTGTTCGCATCATGACTGGATTGCCATTTCAATTGTCATTGAAAAGGATTACCATCTCAACGGTTGGCATCATTCACGCTATCAACAAGCTTCATAATGACCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGCCAGATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTAATGGATTCACTGCAAGAATATCAAAGGAAAAGTCTGCAGAAAATATTAATAGAATACATAATGCTTGATGGGGTGAATGATGAAGAACAGCATGCCCACCAATTGGGAAAACTGTTGGAGACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACTCTATTGGTACCTTGAGTCAATACAAACCTTCCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTTAGGGGTACCTATAATATTCGAACAACAGTTCGCAAGCAGATGGGTCAGGACATAAGTGGTGCTTGTGGACAATTGGTGATTAACATCCCTGACAAGTCTCTTGGCAACGCAGATCCCCTAACCGACATAGAAGATCTTGCTATTTGA 1155 0.4294 MGIRSVFDGGEVRKELEKRGIDRKFIPMIWKRVVANASANASANANTKDWDWEKEVPSLPCSAYSVLASHFKTPLSSSLHSVFHSADNFTSKLLIRLRNGAFVEAVIMRYDTRLGKYGGKPRPGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSSGEILEQLVHASSFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNSIGTLSQYKPSSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVINIPDKSLGNADPLTDIEDLAI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02039 384 SFLD adenosine C2 methyltransferase (RlmN-like) 58 365 IPR004383 GO:0006364|GO:0008173
Cca06g02039 384 ProSiteProfiles Radical SAM core domain profile. 124 353 IPR007197 GO:0003824|GO:0051536
Cca06g02039 384 Pfam Radical SAM superfamily 133 291 IPR007197 GO:0003824|GO:0051536
Cca06g02039 384 Gene3D Aldolase class I 78 368 IPR013785 -
Cca06g02039 384 SFLD methyltransferase (Class A) 58 365 - -
Cca06g02039 384 Pfam 4Fe-4S single cluster domain 137 222 - -
Cca06g02039 384 CDD Radical_SAM 137 338 - -
Cca06g02039 384 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 374 - -
Cca06g02039 384 PANTHER 23S RRNA METHYLTRANSFERASE 3 374 IPR040072 -
Cca06g02039 384 PIRSF Cfr 42 375 IPR004383 GO:0006364|GO:0008173
Cca06g02039 384 SUPERFAMILY Radical SAM enzymes 129 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02039 Cca-Chr6 35640730 35644395 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02039 - - ccaj:109814608 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02039 06 35640730 35644395 Cca06g02039 06 35640730 35644395 ECH