Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02037 ATGGAAGGAACAGAAACGAAGAGCGATGGCAATGGCGATGTTGTTCGTCCATGGCAGTCTTACCACACTGTTTACACGACCGCCAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAGGTACAAAGGGTAGTTTATGAAATGAGCAAAGGATCCAAATACTTTCAAAACGAGGAGCGGAAGGACGCTTATATTAAGCAGAAAATTGACAACCTGCGAATTCACTGTGCAAAGCTCACACAAGCAGACTTGTCCAATTATCAAAAGGTGGCTGATAGTAGAATTGTTGAGCTAGAAGCTTCACGTGACCTCTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCAGTTGAGACTTTAAGTAACCCTACATTAAAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGTTATCCACTGCCAACTATGAGGCCCGGAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAGAAGTATAATTATTACAGTGATTTGACCAGAAAAGTTTTTCAGAGGTATGATCCCAATTTCATTGCTGGTAGTCTGGATGAAGCATACCTTGATGTAACTGAAGTTTGCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCCCAAGTACTCAGAGCTAGTGTTTATGAAGAGACTGGTCTCACCTGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATATTTTGCCAAATGATCGCATGGCCGTTATGACCTTCATATCCTCCCTTCCTATTAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACAAATTTTGAAGGAAGTTTTTGGAATTAACACATGTGAGCAGATGCTGGAGAAGAGTAGCTACCTTTGCGCACTTTTCTCTCAGTCATCAGCAGATTTTTTTCTCTCTGTAGGTTTAGGTCTTGGGCAGACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACTGAGGATGAAGTGCTGTTGCATAAAAGATTGGTGGAGCTTGCTGAAATGTTATCAACCGATATGCAAAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACTAGAGCTGTGACTTTACAAAAGTACATCAGCTCAAGTGAAGATATTTTGAAGCATGCTCAAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGTTAGgtcttagagtatcgcagtttaatggagacaagtgtagtgctatgtctgatcctacacagaagaccattaccaacttcattactttgggagatatcaatagaaattgtagttattcttcagatgttgcagatcataattttgtcagtaatgcagagactgatctttccattgacagtcggcagacaagtcagcttgattggagagatccttttgatgataatcattcatcagatgtaggttacCAAAGCTGCCCAGTCTGGCAAAATGATTGTGTAGAGGAGGTACAAACATCTAGTAATGGTGCTACAAGTTCTAACTACATTGGATTTACGGAAGTGCTGGGGTCAACTTCTTTCCAGGGGCAGTTTGAAGGCGTAAATGTGAAGAATAGTTCCAATTTCCTGGAGGATGAGGGGCTTAATTCTTGTTGCCAGGAGAAGACAATGTTGTGGTTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTGCCTCCAAGTTTTGTAGAGGAAAGATTGGAGCATTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGACTAGGATTCACCAAACATCTGTTACTCAAAGTCGGGGACAAAAGGATGTAATCACTAGACAAAGCAAATCCAAGAAGCAAAAGTTGTCGCAGAAAGAATGCAGGTATACACCCATTGATTATTTTTTTGTTAAAAAATAA 2010 0.3612 MEGTETKSDGNGDVVRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKDAYIKQKIDNLRIHCAKLTQADLSNYQKVADSRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSMSMLSTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYNYYSDLTRKVFQRYDPNFIAGSLDEAYLDVTEVCKERNVKSEEIAQVLRASVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYILPNDRMAVMTFISSLPIRKIGGIGKVTEQILKEVFGINTCEQMLEKSSYLCALFSQSSADFFLSVGLGLGQTDSPQVRFRKSISNERTFSATEDEVLLHKRLVELAEMLSTDMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAQKLLKAELPISVRLLGLRVSQFNGDKCSAMSDPTQKTITNFITLGDINRNCSYSSDVADHNFVSNAETDLSIDSRQTSQLDWRDPFDDNHSSDVGYQSCPVWQNDCVEEVQTSSNGATSSNYIGFTEVLGSTSFQGQFEGVNVKNSSNFLEDEGLNSCCQEKTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRTRIHQTSVTQSRGQKDVITRQSKSKKQKLSQKECRYTPIDYFFVKK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02037 669 Pfam impB/mucB/samB family 110 254 IPR001126 GO:0006281
Cca06g02037 669 CDD PolY_Pol_IV_kappa 108 440 IPR022880 GO:0003887
Cca06g02037 669 Gene3D - 25 111 - -
Cca06g02037 669 Pfam Ubiquitin-Binding Zinc Finger 587 620 IPR041298 -
Cca06g02037 669 ProSiteProfiles UmuC domain profile. 107 287 IPR001126 GO:0006281
Cca06g02037 669 PANTHER DNA POLYMERASE KAPPA 9 648 - -
Cca06g02037 669 ProSiteProfiles Zinc finger UBZ3-type profile. 583 620 IPR041298 -
Cca06g02037 669 SUPERFAMILY DNA/RNA polymerases 81 334 IPR043502 -
Cca06g02037 669 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 9 648 - -
Cca06g02037 669 Gene3D - 112 262 IPR043128 -
Cca06g02037 669 Gene3D - 263 336 - -
Cca06g02037 669 Hamap DNA polymerase IV [dinB]. 104 456 IPR022880 GO:0003887
Cca06g02037 669 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 341 438 IPR036775 GO:0003684|GO:0006281
Cca06g02037 669 Gene3D - 341 446 IPR036775 GO:0003684|GO:0006281
Cca06g02037 669 MobiDBLite consensus disorder prediction 622 650 - -
Cca06g02037 669 Pfam IMS family HHH motif 270 300 IPR024728 -
Cca06g02037 669 Pfam impB/mucB/samB family C-terminal domain 343 443 IPR017961 GO:0003684|GO:0006281
Cca06g02037 669 Gene3D - 124 172 - -
Cca06g02037 669 PIRSF DNA_pol_eta 462 669 - -
Cca06g02037 669 PIRSF DNA_pol_eta 219 462 - -
Cca06g02037 669 PIRSF DNA_pol_eta 99 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02037 Cca-Chr6 35630041 35634718 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02037 K03511 - gmx:100816973 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02037 06 35630041 35634718 Cca06g02037 06 35630041 35634718 ECH