Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01869 ATGAAACTGAAACATGAAGATTCATCATCACCACCACACATCAAATTCAAATTCAAATACCAATTCCAAATGTCAAGGCAACAATGCAATAGCAGCATTTTTGGCCTCTCCTTTTCCTTCATATTCTCCCTATGGTGCCTTCTCTTCTTCTACATCAAGCTTCGCCTCGTTCATGGCACAGGAGCAATGTTAGAGTTCAATGAATCAGGTAGCTCCGTCAGTCTTAGTCAGAAACTAGCGAAACCCTCCTACTCGCTTCCTGAAACAACTAGTTTAGAACAAGTTTTTTGGCACGTTTTAGGTAATGGTAGTAATTTGGTGTGCAAACTACAACCTCCACCAGAGGAAAACAAACACAAACAAATTCCTGATGGGAAACTTCACCCTAATTATGATGAATTACATAACATGGCAGCAACTCAAGAAAAAACCAGGGGCATGGACTCTGCGCTTGTTAATGTAACTCACAGGCTTGAATCTGATGGTTCTGTGTACAACTACGCCTCTGAGTCCAAGGGTGCAAAGGTAGTGGCCCATAATAAGGAAGCCAAGGGTGCAAAAAATATACTCGGGAAGGACCATGACAAGTACCTGAGAAACCCTTGTTCTGTTGAAGGAAAATTTGTTGTTATTGAACTTTCAGAAGAGACCCTGGTTGATTCTGTGAAAATTGCAAACTTCGAGCATTATTCTTCTAACTTTAAGGAATTTGATTTGGCTGGTAGTTTGAGCTATCCAACTGAAGAATGGAGCATGCTGGGAAATTTTATTGCTGCCAATGTCAAGCATGCACAGATCTTTAAGCTACCTGAACCCAAATGGGCAAGGTATTTAAAGTTGAGTTTGCTTAGTCATTATGGATCTGAATTTTACTGCACATTGAGTGTCGTAGAAGTCTATGGGATCAATGCAATAGAGAGGATGCTTAAGGATTTGATTGTTGCATCTGTGGGATCCATTCCTGATAAGTTGCTTGTGCATAATATCAGTGACACCCCTTCTTTGAAATCAGAAGATGGTCAAATCGACAAGGATGGAAAAAAAGTTGATACTAAGAATGATATAGTGGCTTCCAATATATCGAGCAATGATACCACTCGAGAGTTTGACGCAGAAGTAACAAAAACCACAACGACTGTGAACTTGATTCCCGATCCTGTAATTGATCTTAGACAACAACTAAGTGGTAGGATAGCTGGTGACACTATTCTGAAGATTTTGATGCAGAAAGTGAGATCAGTGGAGGTAAACTTATCTGCCTTGGAGGATTACATCAAAGAATTGAACAAGAAACAAGCTGCCAAAATACCAGATCTTGAGAAAGAATTGTCCAGATTATCAGAAAGCATTGGACAAAGCAAGTCAGAGGTCAAAAATCTCTGGCAGTGGAACACAAATTTGGAAAAGGGAATATCTGAGGTTGAGTCTTGGAAAGAAGCTATCTCATCTCAACTTAATGAATTAGCCAGAGAAAATAGCATGCTAAGATCAGATGTTCGAAAGGTTGCTAATAATCAAGTAAATATGGAAACCAAAGAACTTGCTGTGTTAGCAACGAGTCTTGTTTTTGTATGCCTTGCAGTTGTCAAGATAATTTCAGTACACATGTTGACGTTTTCTGCATCATACAATGCAGATAAGGTGCGCCAGACAATTAGAGGATGGGTTACATTATTTGTATGCTGTAGCATAACAATAATCCTCATCTTGTTTTATAGCTAG 1722 0.3931 MKLKHEDSSSPPHIKFKFKYQFQMSRQQCNSSIFGLSFSFIFSLWCLLFFYIKLRLVHGTGAMLEFNESGSSVSLSQKLAKPSYSLPETTSLEQVFWHVLGNGSNLVCKLQPPPEENKHKQIPDGKLHPNYDELHNMAATQEKTRGMDSALVNVTHRLESDGSVYNYASESKGAKVVAHNKEAKGAKNILGKDHDKYLRNPCSVEGKFVVIELSEETLVDSVKIANFEHYSSNFKEFDLAGSLSYPTEEWSMLGNFIAANVKHAQIFKLPEPKWARYLKLSLLSHYGSEFYCTLSVVEVYGINAIERMLKDLIVASVGSIPDKLLVHNISDTPSLKSEDGQIDKDGKKVDTKNDIVASNISSNDTTREFDAEVTKTTTTVNLIPDPVIDLRQQLSGRIAGDTILKILMQKVRSVEVNLSALEDYIKELNKKQAAKIPDLEKELSRLSESIGQSKSEVKNLWQWNTNLEKGISEVESWKEAISSQLNELARENSMLRSDVRKVANNQVNMETKELAVLATSLVFVCLAVVKIISVHMLTFSASYNADKVRQTIRGWVTLFVCCSITIILILFYS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01869 573 PANTHER MEMBRANE PROTEIN CH1 RELATED 64 572 IPR045120 GO:0016020
Cca06g01869 573 ProSiteProfiles SUN domain profile. 144 304 IPR012919 -
Cca06g01869 573 SUPERFAMILY Galactose-binding domain-like 203 300 IPR008979 -
Cca06g01869 573 Coils Coil 411 449 - -
Cca06g01869 573 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 64 572 - -
Cca06g01869 573 Coils Coil 478 505 - -
Cca06g01869 573 Pfam Sad1 / UNC-like C-terminal 179 301 IPR012919 -
Cca06g01869 573 Gene3D - 177 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01869 Cca-Chr6 34090667 34094397 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01869 - - gmx:102668828 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01869 06 34090667 34094397 Cca06g01869 06 34090667 34094397 ECH